View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_11 (Length: 557)
Name: NF1459_high_11
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 174 - 507
Target Start/End: Original strand, 24482516 - 24482850
Alignment:
| Q |
174 |
tgcaattcagcggctgcaaattgctaaattataaatatctgttgacttccttcaaaaagtattttttgactaacattattttatcttaatagaaaatata |
273 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24482516 |
tgcaactcaacggctgcaaattgctaaattataaatatttgttgacttccttcaaaaagtattttttgactaacattattttatcttaatagaaaatata |
24482615 |
T |
|
| Q |
274 |
ttttatgctagaaaagttctatagttgaaaatcatgcataaacaattnnnnnnnnntctttttattttgactcaaacggataaataattctttt-attat |
372 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||| |
|
|
| T |
24482616 |
ttttatgctagaaaagttctgtagttgaaaatcatgcataaacaattaaaaaaaaatctttt-attttgactcaaacggataaatgattctttttattat |
24482714 |
T |
|
| Q |
373 |
caaaaaattcaacatacagatattagtcaca--cattgtatagaataatggtttggcgcactagggttagatttgtgtatgacatttttcaaaagacttt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
24482715 |
caaaaaattcaacatacagatattagtcacacacattgtatagaatgatggtttgtcgcactagggttagatttgtttatgacatttttc-aaagacttt |
24482813 |
T |
|
| Q |
471 |
taaaacataaaccaaagttttcaactatatatttcaa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24482814 |
taaaacataaaccaaagttttcaactatatatttcaa |
24482850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 24482346 - 24482470
Alignment:
| Q |
19 |
ataccgacttttgaaaattcatatttgcatgtatacattttatgacatgattgatattgatgcatcttgcttgaggaaaaagatatgcatataacttgcg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24482346 |
ataccgacttttgaaaattcatatttgcatgtatacattttatgacatgattgatattgatgcatcttgcttgaggaaaaagatatgcatataacttgcg |
24482445 |
T |
|
| Q |
119 |
gaagaagaagatatcgtgataatgtttt |
146 |
Q |
| |
|
||||||||||| ||||||||||||| |
|
|
| T |
24482446 |
---gaagaagatattgtgataatgtttt |
24482470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 242 - 500
Target Start/End: Original strand, 24461991 - 24462249
Alignment:
| Q |
242 |
actaacattattttatcttaatagaaaatatattttatgctagaaaagttctatagttgaaaatcatgcataaacaattnnnnnnnnntctttttatttt |
341 |
Q |
| |
|
||||| ||||||||| | |||||||||||||||||||||||||||||||| | |||| |||||||| |||||||||||| |||||||||||| |
|
|
| T |
24461991 |
actaatattattttaacgtaatagaaaatatattttatgctagaaaagttttgtagtggaaaatcaagcataaacaattgaaaaaaa-tctttttatttt |
24462089 |
T |
|
| Q |
342 |
gactcaaacggataaataattcttttattatcaaaaaattcaacatacagatattagt--cacacattgtatagaataatggtttggcgcactagggtta |
439 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |||| |||| ||| ||| |||||| ||||||||| ||| ||||| | |||| ||| | |
|
|
| T |
24462090 |
gactcaaataaataaataattcttttattgtcaaaaaatacaacgtacaagtatcagtcacacacaatgtatagaaaaattgtttgtcaaactacggtaa |
24462189 |
T |
|
| Q |
440 |
gatttgtgtatgacatttttcaaaagacttttaaaacataaaccaaagttttcaactatat |
500 |
Q |
| |
|
|||||| |||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
24462190 |
tatttgtttatggcatttttc-gaagacttttaaaacctaaaccaaagttttcaactatat |
24462249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 501 - 557
Target Start/End: Original strand, 24483037 - 24483093
Alignment:
| Q |
501 |
atttcaaataggatttatcatgactctaagtaagtgtttgataatgcagcacattaa |
557 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
24483037 |
atttcaaataggatttatcatgactctaagtacgtgtttgataatgcagcgcattaa |
24483093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University