View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_111 (Length: 257)
Name: NF1459_high_111
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_111 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 13704795 - 13705011
Alignment:
| Q |
25 |
atatgtttattggtttagtatttaaatttggttcattctatctaaactatattttgtttatttattatcaattgttcacatatggtgaacaatgaatagc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
13704795 |
atatgtttattggtttagtatttaaatttggttcattctatctgaactatattttgtttatttattatcaattgttcgcatatggtgaacaatgaataac |
13704894 |
T |
|
| Q |
125 |
gttcttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaaatggtccaagattgctaagtacatgaatggcagaattggaaaa |
224 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
13704895 |
atttttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaaatggtccaagattgctaagtatatgaatggcagaatcggaaaa |
13704994 |
T |
|
| Q |
225 |
cagtgcagggagagatg |
241 |
Q |
| |
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||||||||||||||||| |
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| T |
13704995 |
cagtgcagggagagatg |
13705011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 13642404 - 13642620
Alignment:
| Q |
25 |
atatgtttattggtttagtatttaaatttggttcattctatctaaactatattttgtttatttattatcaattgttcacatatggtgaacaatgaatagc |
124 |
Q |
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| T |
13642404 |
atatgttaattggtttagtatttaaatttggttcattctatctgaactatattttgtttatttattatcaattgttcacatatgatgaacaatgaatagc |
13642503 |
T |
|
| Q |
125 |
gttcttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaaatggtccaagattgctaagtacatgaatggcagaattggaaaa |
224 |
Q |
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| T |
13642504 |
attcttatgtttttgtaggattcttattcaattggttgatcgcttcgggctgagaaattggtccaagattgctaagtatatgaatggcagaatcggaaaa |
13642603 |
T |
|
| Q |
225 |
cagtgcagggagagatg |
241 |
Q |
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||||||||||||||||| |
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| T |
13642604 |
cagtgcagggagagatg |
13642620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 82 - 241
Target Start/End: Complemental strand, 17176271 - 17176112
Alignment:
| Q |
82 |
ttatttattatcaattgttcacatatggtgaacaatgaatagcgttcttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaa |
181 |
Q |
| |
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|||||| ||||||||| || ||||||| | |||||||| || | |||| |||||||||| ||||| | |||||||| |||| ||||||||| ||||| |
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| T |
17176271 |
ttatttgttatcaattcttgacatatgataaacaatgattaattattttatatttttgtagggttcttgtccaattggtggatcactttgggcttagaaa |
17176172 |
T |
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| Q |
182 |
atggtccaagattgctaagtacatgaatggcagaattggaaaacagtgcagggagagatg |
241 |
Q |
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||||| |||||||||| |||| || |||||||||||||| ||||| |||||||| |
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| T |
17176171 |
ttggtctcgtattgctaagtttctgaaaggaagaattggaaaacaatgcagagagagatg |
17176112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 241
Target Start/End: Complemental strand, 13469136 - 13469085
Alignment:
| Q |
190 |
agattgctaagtacatgaatggcagaattggaaaacagtgcagggagagatg |
241 |
Q |
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| T |
13469136 |
agattgctaagtctatgaatggaagaatcggaaaacagtgcagggagagatg |
13469085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 34656528 - 34656416
Alignment:
| Q |
129 |
ttatgtttttgtaggattcttattcaattggttgatcgctttgggctgagaaaatggtccaagattgctaagtacatgaatggcagaattggaaaacagt |
228 |
Q |
| |
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|||| ||||| |||| ||||| |||||||||| ||| |||||| || |||||||||||| ||||||| ||||||||||| || || ||||||||||||| |
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| T |
34656528 |
ttatatttttttagggttcttgttcaattggtgaatcactttggtcttagaaaatggtcccagattgcgaagtacatgaaaggtaggattggaaaacagt |
34656429 |
T |
|
| Q |
229 |
gcagggagagatg |
241 |
Q |
| |
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| || |||||||| |
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| T |
34656428 |
gtagagagagatg |
34656416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33247647 - 33247680
Alignment:
| Q |
1 |
aaggactaatcacatcattaagccatatgtttat |
34 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
33247647 |
aaggactaatcacatcattaaaccatatgtttat |
33247680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 25522137 - 25522185
Alignment:
| Q |
193 |
ttgctaagtacatgaatggcagaattggaaaacagtgcagggagagatg |
241 |
Q |
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||||||||| ||||||||||||| ||||||||||| ||||||||||| |
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| T |
25522137 |
ttgctaagtttatgaatggcagaagcggaaaacagtgtagggagagatg |
25522185 |
T |
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