View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_112 (Length: 256)
Name: NF1459_high_112
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_112 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 45039537 - 45039764
Alignment:
| Q |
11 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
110 |
Q |
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| T |
45039537 |
gtgaaatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
45039636 |
T |
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| Q |
111 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgac |
210 |
Q |
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| T |
45039637 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctgtccataacaagtatcaatgtcttgccatttggaaatactcttgac |
45039736 |
T |
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| Q |
211 |
atcaccattattgccaaggcaagtaatt |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
45039737 |
atcaccattattgccaaggcaagtaatt |
45039764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 238
Target Start/End: Complemental strand, 45083053 - 45082826
Alignment:
| Q |
11 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
110 |
Q |
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| T |
45083053 |
gtgaaatgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgg |
45082954 |
T |
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| Q |
111 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgac |
210 |
Q |
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| T |
45082953 |
gaagtaaaaggagattctggtcaatataattttgcagcttcaaattcttcatctctccataacaactaccaatgtcttgccatttggaaatactcttaac |
45082854 |
T |
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| Q |
211 |
atcaccattattgccaaggcaagtaatt |
238 |
Q |
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| T |
45082853 |
atcactattattgcccaggcaagtaatt |
45082826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 45065449 - 45065543
Alignment:
| Q |
11 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttat |
105 |
Q |
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|||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||| |||| | ||||||||| | ||| ||||||||| |
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| T |
45065449 |
gtgaaatgaacactgaagaatgttatggccgaaataaatcacttctaaaggttgatgctagagttcttgggaaggaagtgtcaattaagatttat |
45065543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 29377295 - 29377517
Alignment:
| Q |
16 |
atgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtggaatgc |
115 |
Q |
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||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||| |||| |
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| T |
29377295 |
atgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgc |
29377394 |
T |
|
| Q |
116 |
aagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgacatcac |
215 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
29377395 |
aagaggggattgtggtcaatataatgtcccagcttcagcttcttcatctctccgtaacaactaccaatgtcttgccatttggaaatactcttgacatcgc |
29377494 |
T |
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| Q |
216 |
cattattgccaaggcaagtaatt |
238 |
Q |
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||||||||| |||||||||||| |
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| T |
29377495 |
cattattgctcaggcaagtaatt |
29377517 |
T |
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