View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_high_121 (Length: 250)

Name: NF1459_high_121
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_high_121
NF1459_high_121
[»] chr3 (5 HSPs)
chr3 (16-126)||(24642185-24642295)
chr3 (192-250)||(24642061-24642119)
chr3 (192-250)||(24694516-24694574)
chr3 (192-250)||(24693430-24693488)
chr3 (48-89)||(24695466-24695507)


Alignment Details
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 126
Target Start/End: Complemental strand, 24642295 - 24642185
Alignment:
Q  16 atcctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttattaaaccttcccaccattgtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  24642295 atcctcggctcctgtcagccaaccatgaccaggatgactattcaaataattaactgactttatccttctctgtgttttatcaaaccttcccaccattgtc 24642196  T
Q  116 cactaacaatg 126  Q
    |||||||||||    
T  24642195 cactaacaatg 24642185  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 24642119 - 24642061
Alignment:
Q  192 gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtt 250  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  24642119 gttcaatcaaaacagaatgattacgcgtaattacaaagcttacttttttctgatgggtt 24642061  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 24694574 - 24694516
Alignment:
Q  192 gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtt 250  Q
    |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  24694574 gttcaatcaaaacagaatgattacgcgtaattacaaagcttattttattctgatgggtt 24694516  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 24693488 - 24693430
Alignment:
Q  192 gttcaatcaaaacaaaatgattacgcgtaattacaaagcttactttattctgatgggtt 250  Q
    |||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||    
T  24693488 gttcaatcaaaacagaatgattacgcataattacaaagcttattttattttgatgggtt 24693430  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 24695507 - 24695466
Alignment:
Q  48 gatgactattcaaataattaactgactttatccttctctgtg 89  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  24695507 gatgactattcaaataattaacggactttatccttctttgtg 24695466  T

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