View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_high_123 (Length: 249)

Name: NF1459_high_123
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_high_123
NF1459_high_123
[»] chr1 (28 HSPs)
chr1 (117-248)||(33734154-33734285)
chr1 (102-187)||(32540787-32540872)
chr1 (90-138)||(4609059-4609107)
chr1 (13-77)||(33734292-33734355)
chr1 (80-138)||(17127581-17127639)
chr1 (121-182)||(44938872-44938933)
chr1 (102-138)||(741541-741577)
chr1 (102-138)||(1091583-1091619)
chr1 (102-138)||(1819528-1819564)
chr1 (90-138)||(8337878-8337926)
chr1 (102-138)||(29179636-29179672)
chr1 (102-138)||(29371431-29371467)
chr1 (90-138)||(47303458-47303506)
chr1 (102-138)||(48993956-48993992)
chr1 (92-138)||(45728350-45728396)
chr1 (102-138)||(5995432-5995468)
chr1 (102-138)||(15220874-15220910)
chr1 (102-138)||(28928818-28928854)
chr1 (102-173)||(33219601-33219672)
chr1 (102-138)||(34062272-34062308)
chr1 (102-138)||(37155109-37155145)
chr1 (102-134)||(38674544-38674576)
chr1 (102-134)||(46333985-46334017)
chr1 (90-138)||(48604974-48605022)
chr1 (84-173)||(25061983-25062072)
chr1 (102-138)||(9157373-9157409)
chr1 (80-173)||(12440979-12441076)
chr1 (102-138)||(48498478-48498514)
[»] chr5 (24 HSPs)
chr5 (79-138)||(29699430-29699489)
chr5 (81-138)||(28818980-28819037)
chr5 (102-163)||(37325597-37325658)
chr5 (79-138)||(2093953-2094012)
chr5 (79-138)||(2953253-2953312)
chr5 (80-171)||(11983272-11983365)
chr5 (102-138)||(3899902-3899938)
chr5 (102-138)||(16439201-16439237)
chr5 (102-138)||(16971207-16971243)
chr5 (102-138)||(19655221-19655257)
chr5 (102-173)||(14167191-14167260)
chr5 (121-214)||(7137629-7137721)
chr5 (79-136)||(12913868-12913925)
chr5 (79-138)||(26662462-26662522)
chr5 (79-138)||(26934057-26934117)
chr5 (79-138)||(291160-291219)
chr5 (91-126)||(6912325-6912360)
chr5 (66-125)||(17849221-17849280)
chr5 (79-125)||(16439154-16439200)
chr5 (144-205)||(7137745-7137805)
chr5 (102-138)||(3180099-3180135)
chr5 (68-128)||(7009401-7009461)
chr5 (102-138)||(16802507-16802543)
chr5 (102-138)||(38134412-38134448)
[»] chr3 (17 HSPs)
chr3 (82-173)||(21024113-21024204)
chr3 (102-138)||(29031753-29031789)
chr3 (102-138)||(30476513-30476549)
chr3 (102-138)||(33689239-33689275)
chr3 (79-138)||(1801462-1801521)
chr3 (79-138)||(47492063-47492122)
chr3 (103-138)||(47677295-47677330)
chr3 (102-172)||(45755090-45755162)
chr3 (81-138)||(50524765-50524822)
chr3 (89-138)||(55223295-55223344)
chr3 (102-138)||(43139748-43139784)
chr3 (102-134)||(45103148-45103180)
chr3 (82-138)||(51046092-51046148)
chr3 (103-138)||(30734442-30734477)
chr3 (81-138)||(41753027-41753084)
chr3 (141-173)||(16205737-16205769)
chr3 (102-158)||(49727186-49727242)
[»] chr4 (23 HSPs)
chr4 (68-173)||(47762636-47762741)
chr4 (81-138)||(6271765-6271822)
chr4 (90-138)||(47404612-47404660)
chr4 (79-138)||(42375073-42375132)
chr4 (89-136)||(55090022-55090069)
chr4 (68-138)||(25818378-25818448)
chr4 (102-138)||(23444308-23444344)
chr4 (90-134)||(26186043-26186087)
chr4 (102-138)||(40789242-40789278)
chr4 (102-138)||(47661905-47661941)
chr4 (102-138)||(50384144-50384180)
chr4 (102-138)||(52028612-52028648)
chr4 (102-138)||(24006109-24006145)
chr4 (102-138)||(31430500-31430536)
chr4 (102-138)||(45591449-45591485)
chr4 (102-162)||(49469947-49470007)
chr4 (102-138)||(51265508-51265544)
chr4 (103-138)||(35682229-35682264)
chr4 (144-182)||(44023038-44023076)
chr4 (120-173)||(9712929-9712982)
chr4 (102-138)||(28693962-28693998)
chr4 (106-138)||(53954673-53954705)
chr4 (89-125)||(55090072-55090108)
[»] chr2 (16 HSPs)
chr2 (80-138)||(14229370-14229428)
chr2 (107-173)||(43402369-43402435)
chr2 (89-138)||(15011343-15011392)
chr2 (102-138)||(16514487-16514523)
chr2 (91-138)||(2894026-2894073)
chr2 (79-138)||(6217240-6217299)
chr2 (81-138)||(37961769-37961826)
chr2 (102-138)||(2828647-2828683)
chr2 (102-138)||(6722014-6722050)
chr2 (102-138)||(38933650-38933686)
chr2 (79-138)||(29925586-29925645)
chr2 (147-189)||(14892344-14892386)
chr2 (89-130)||(14464581-14464622)
chr2 (86-131)||(24115990-24116035)
chr2 (102-138)||(14470631-14470667)
chr2 (102-138)||(37762040-37762076)
[»] chr6 (9 HSPs)
chr6 (81-138)||(13043520-13043577)
chr6 (79-138)||(12343163-12343222)
chr6 (79-125)||(24587477-24587523)
chr6 (90-138)||(551192-551240)
chr6 (102-138)||(10521888-10521924)
chr6 (103-134)||(17750969-17751000)
chr6 (79-138)||(24618617-24618676)
chr6 (129-173)||(178662-178706)
chr6 (102-138)||(2315343-2315379)
[»] scaffold0586 (1 HSPs)
scaffold0586 (79-138)||(7063-7122)
[»] chr8 (18 HSPs)
chr8 (80-138)||(31159914-31159972)
chr8 (82-206)||(45191146-45191269)
chr8 (102-138)||(5033224-5033260)
chr8 (106-213)||(5667086-5667192)
chr8 (86-138)||(6296668-6296720)
chr8 (90-138)||(34229704-34229752)
chr8 (102-138)||(35441008-35441044)
chr8 (102-173)||(37618766-37618835)
chr8 (89-138)||(8243414-8243463)
chr8 (102-139)||(35031653-35031690)
chr8 (102-138)||(10086820-10086856)
chr8 (102-138)||(33841630-33841666)
chr8 (80-138)||(8796485-8796543)
chr8 (79-125)||(34229657-34229703)
chr8 (80-125)||(8796439-8796484)
chr8 (90-163)||(13470017-13470090)
chr8 (82-138)||(4958662-4958717)
chr8 (102-138)||(34541842-34541878)
[»] scaffold1033 (1 HSPs)
scaffold1033 (102-138)||(2276-2312)
[»] scaffold1029 (1 HSPs)
scaffold1029 (102-138)||(2276-2312)
[»] scaffold0047 (1 HSPs)
scaffold0047 (102-138)||(63820-63856)
[»] chr7 (14 HSPs)
chr7 (90-138)||(7671938-7671986)
chr7 (102-138)||(15027605-15027641)
chr7 (79-138)||(4290608-4290667)
chr7 (79-138)||(48000710-48000769)
chr7 (90-136)||(4649387-4649433)
chr7 (102-206)||(41018267-41018370)
chr7 (91-171)||(6225553-6225633)
chr7 (102-138)||(11016932-11016968)
chr7 (102-138)||(27028832-27028868)
chr7 (102-138)||(42628358-42628394)
chr7 (129-173)||(6980943-6980987)
chr7 (90-138)||(10419521-10419569)
chr7 (102-138)||(29053353-29053389)
chr7 (102-138)||(34854734-34854770)
[»] scaffold0481 (1 HSPs)
scaffold0481 (102-138)||(2926-2962)
[»] scaffold0016 (1 HSPs)
scaffold0016 (102-138)||(49742-49778)
[»] scaffold0161 (1 HSPs)
scaffold0161 (79-138)||(27236-27295)
[»] scaffold0180 (1 HSPs)
scaffold0180 (102-138)||(19161-19197)
[»] scaffold0001 (1 HSPs)
scaffold0001 (120-184)||(507733-507797)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 5e-40; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 33734285 - 33734154
Alignment:
Q  117 atgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtcaataatgtcatccaactataatgtcatccaagtactacccgtca 216  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||  ||||||||  ||||||| |||||| |||||| ||||||||  | |||||||    
T  33734285 atgcttgtgaaagagagaaaaaatagccacttgtaatattgtggttggccaatgtcaccaatgtcacccaactttaatgttatccaagtgatgcccgtca 33734186  T
Q  217 cactcacatattattaagtgtatgtttcattc 248  Q
    ||||||||||||||||||||||||||||||||    
T  33734185 cactcacatattattaagtgtatgtttcattc 33734154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 32540787 - 32540872
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatcaatgtcaataatgtcatccaa 187  Q
    ||||||||||||||||||||||||||||||||||||| | |  || ||||||||||||| ||| |||||||||  ||||||||||||    
T  32540787 aatcacaatgtcacaatgcttgtgaaagagagagaaacacaagca-ttgtaacattgtgattggtcaatgtcaccaatgtcatccaa 32540872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 4609107 - 4609059
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||    
T  4609107 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaa 4609059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 33734355 - 33734292
Alignment:
Q  13 atactacagaggtgccagagttatgtttttgtaatcatttaacaatgtcacattcggatagcact 77  Q
    ||||||| ||||||||||| |||||||||||| |||||| ||||||||||||||| |||||||||    
T  33734355 atactactgaggtgccagaattatgtttttgt-atcattcaacaatgtcacattcagatagcact 33734292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 17127581 - 17127639
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| ||||||||||||    |||||||||||||||||||||||||||||||||||||    
T  17127581 ggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtgaaagagagagaaa 17127639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 182
Target Start/End: Original strand, 44938872 - 44938933
Alignment:
Q  121 ttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtcaataatgtca 182  Q
    |||||||||||| |||| | ||||||||||| ||||||||||| ||||||||| ||||||||    
T  44938872 ttgtgaaagagaaagaagaaagccacttgtaccattgtggttgttcaatgtcactaatgtca 44938933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 741541 - 741577
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  741541 aatcacaatgtcacaatgcttgtgaaagagagagaaa 741577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 1091583 - 1091619
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  1091583 aatcacaatgtcacaatgcttgtgaaagagagagaaa 1091619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 1819528 - 1819564
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  1819528 aatcacaatgtcacaatgcttgtgaaagagagagaaa 1819564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 8337878 - 8337926
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||    
T  8337878 gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 8337926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 29179636 - 29179672
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  29179636 aatcacaatgtcacaatgcttgtgaaagagagagaaa 29179672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 29371467 - 29371431
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  29371467 aatcacaatgtcacaatgcttgtgaaagagagagaaa 29371431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 47303506 - 47303458
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||||||||||| ||||||||||||||||||    
T  47303506 gtgacattggtcaatcacaatgtcacaatgtttgtgaaagagagagaaa 47303458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 48993956 - 48993992
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  48993956 aatcacaatgtcacaatgcttgtgaaagagagagaaa 48993992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 92 - 138
Target Start/End: Complemental strand, 45728396 - 45728350
Alignment:
Q  92 gacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| || ||||||||||||| |||||||||||||||||||||||    
T  45728396 gacattggtcaatcacaatgtcataatgcttgtgaaagagagagaaa 45728350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 5995468 - 5995432
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| ||||||||||||||||||||||||||    
T  5995468 aatcacaatgccacaatgcttgtgaaagagagagaaa 5995432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 15220910 - 15220874
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| |||||||||||||||||||||||||||    
T  15220910 aatcacaatctcacaatgcttgtgaaagagagagaaa 15220874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 28928818 - 28928854
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||| |||||||||||||||||||||    
T  28928818 aatcacaatgtcacagtgcttgtgaaagagagagaaa 28928854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 173
Target Start/End: Complemental strand, 33219672 - 33219601
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||||||||| ||||||||||||||||||| ||| | |  || ||||||||||||| |||||||||||||    
T  33219672 aatcacaatgtcataatgcttgtgaaagagagaaaaacacaagca-ttgtaacattgtgattgatcaatgtca 33219601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 34062308 - 34062272
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||||||||    
T  34062308 aatcacaatgtcacaatgtttgtgaaagagagagaaa 34062272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 37155145 - 37155109
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||| |||||||||||||||||||    
T  37155145 aatcacaatgtcacaatacttgtgaaagagagagaaa 37155109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 38674544 - 38674576
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagaga 134  Q
    |||||||||||||||||||||||||||||||||    
T  38674544 aatcacaatgtcacaatgcttgtgaaagagaga 38674576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 46333985 - 46334017
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagaga 134  Q
    |||||||||||||||||||||||||||||||||    
T  46333985 aatcacaatgtcacaatgcttgtgaaagagaga 46334017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 48604974 - 48605022
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||||||||||  ||||||||||||||||||    
T  48604974 gtgacattggtcaatcacaatgtcacaatatttgtgaaagagagagaaa 48605022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 173
Target Start/End: Complemental strand, 25062072 - 25061983
Alignment:
Q  84 atattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    |||||| |||||||  | ||| ||||||||| ||| ||||||||||||| | |||| |||||| ||||| ||| || |||| ||||||||    
T  25062072 atattaatgacattgatcaattacaatgtcataattcttgtgaaagagaaacaaaaaagccacatgtaagattctgattgaccaatgtca 25061983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 9157409 - 9157373
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  9157409 aatcacaatatcacaatgcttgagaaagagagagaaa 9157373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 12441076 - 12440979
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaaata----gccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||| ||| ||| |||| | |||||||||||||| ||| ||||| |||||||| ||||| |    | ||||||| |||||||||||| |||||||||    
T  12441076 ggtgacattggtggcattggctaatcacaatgtcataatccttgtaaaagagagggaaaaaaaaaagtcacttgtgacattgtggttggtcaatgtca 12440979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 48498514 - 48498478
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||| || ||||||||||||||||||||||    
T  48498514 aatcacaatgttaccatgcttgtgaaagagagagaaa 48498478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 29699489 - 29699430
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||    
T  29699489 gggtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 29699430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 28819037 - 28818980
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| |||||||| || ||||| |||||||||||||||||||||||||||||||    
T  28819037 gtgatattggtgacattggtcaatcataatgtcacaatgcttgtgaaagagagagaaa 28818980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 102 - 163
Target Start/End: Original strand, 37325597 - 37325658
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttg 163  Q
    ||||||||||||||||| ||||||||||||||| | || |||||||||| ||||||||||||    
T  37325597 aatcacaatgtcacaatccttgtgaaagagagaaagaaaagccacttgtgacattgtggttg 37325658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 2093953 - 2094012
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| ||||||||  | ||||||||||||| |||||||||||||||||||||||    
T  2093953 gggtgatattggtgacattgatcaatcacaatgtcataatgcttgtgaaagagagagaaa 2094012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 2953312 - 2953253
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  |||||||||||||||||||||||||||||||||||||    
T  2953312 gggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 2953253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 11983272 - 11983365
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgctt--gtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgt 171  Q
    ||||||||| |||||||| || ||||| |||||||||||  ||  | || ||||||||| || ||||||||||||||||||||||| |||||||    
T  11983272 ggtgatattggtgacattggtcaatcaaaatgtcacaatctttgagagagagagagagataaaagccacttgtaacattgtggttggtcaatgt 11983365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 3899938 - 3899902
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  3899938 aatcacaatgtcacaatgcttgtgaaagagagagaaa 3899902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 16439237 - 16439201
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  16439237 aatcacaatgtcacaatgcttgtgaaagagagagaaa 16439201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 16971243 - 16971207
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  16971243 aatcacaatgtcacaatgcttgtgaaagagagagaaa 16971207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 19655257 - 19655221
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  19655257 aatcacaatgtcacaatgcttgtgaaagagagagaaa 19655221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 14167191 - 14167260
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||||||||||||| ||||||||||||||| |||| || ||||||||| |||||||||  |||||||||    
T  14167191 aatcacaatgtcacaatccttgtgaaagagaga-aaaaaag-cacttgtaatattgtggttagtcaatgtca 14167260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 214
Target Start/End: Complemental strand, 7137721 - 7137629
Alignment:
Q  121 ttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtcaataatgtcatccaactataatgtcatccaagtactacccgt 214  Q
    ||||||||||||  ||| | || ||||||| |||||||||||| |||||||||  ||| ||| ||||||  ||||||| |||||||||||||||    
T  7137721 ttgtgaaagagaatgaagaaagtcacttgtgacattgtggttggtcaatgtcaccaatttca-ccaactgcaatgtcacccaagtactacccgt 7137629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 136
Target Start/End: Complemental strand, 12913925 - 12913868
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagaga 136  Q
    |||||| ||| |||| ||| || ||||||||||||| |||||||||||||||||||||    
T  12913925 gggtgacattggtgatattggtcaatcacaatgtcataatgcttgtgaaagagagaga 12913868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 26662522 - 26662462
Alignment:
Q  79 gggtgatattagtgacattagttaa-tcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| |||||||| || || ||||||||||||||| ||||||||| |||||||||    
T  26662522 gggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaa 26662462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 26934117 - 26934057
Alignment:
Q  79 gggtgatattagtgacattagttaa-tcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| |||||||| || || ||||||||||||||| ||||||||| |||||||||    
T  26934117 gggtgatattggtgacattggtcaaatcacaatgtcacaatacttgtgaaaaagagagaaa 26934057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 291219 - 291160
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| ||||||||  | |||||||||||||||||| |||||||||||| |||||    
T  291219 gggtgacattggtgacattgatcaatcacaatgtcacaatgtttgtgaaagagaaagaaa 291160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 126
Target Start/End: Original strand, 6912325 - 6912360
Alignment:
Q  91 tgacattagttaatcacaatgtcacaatgcttgtga 126  Q
    |||||||||| |||||||||||||||||||||||||    
T  6912325 tgacattagtcaatcacaatgtcacaatgcttgtga 6912360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 17849280 - 17849221
Alignment:
Q  66 tcggatagcactcgggtgatattagtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    |||| ||||||| |||||||||| |||||||| || ||||||||| || |||||||||||    
T  17849280 tcgggtagcacttgggtgatattggtgacattggtcaatcacaatatcgcaatgcttgtg 17849221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 16439154 - 16439200
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||||    
T  16439154 gggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtg 16439200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 7137745 - 7137805
Alignment:
Q  144 cacttgtaacattgtggttgatcaatgtcaataatgtcatccaactataatgtcatccaagt 205  Q
    ||||||| ||||||||||||| |||||||   ||||||| ||||||||||||||| ||||||    
T  7137745 cacttgtgacattgtggttgaccaatgtcgtcaatgtca-ccaactataatgtcacccaagt 7137805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 3180099 - 3180135
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  3180099 aatcataatgtcacaatgtttgtgaaagagagagaaa 3180135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 7009461 - 7009401
Alignment:
Q  68 ggatagcactcgggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaa 128  Q
    |||||||||| || ||| ||| |||| ||| || ||||||||| |||||||||||||||||    
T  7009461 ggatagcacttggatgacattggtgatattggtcaatcacaatatcacaatgcttgtgaaa 7009401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 16802543 - 16802507
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  16802543 aatcagaatgtcacaatgcttgtaaaagagagagaaa 16802507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 38134412 - 38134448
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||| |||||||||| |||||    
T  38134412 aatcacaatgtcacaatgctagtgaaagagaaagaaa 38134448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 21024113 - 21024204
Alignment:
Q  82 tgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||| |||||||| || || |||||||||||||| ||||||||||||||| |||| || ||| ||| ||||| |||||| |||||||||    
T  21024113 tgatattggtgacattggtcaaacacaatgtcacaattcttgtgaaagagagaaaaaaaaggcacgtgtgacattatggttggtcaatgtca 21024204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 29031753 - 29031789
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  29031753 aatcacaatgtcacaatgcttgtgaaagagagagaaa 29031789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 30476513 - 30476549
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  30476513 aatcacaatgtcacaatgcttgtgaaagagagagaaa 30476549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 33689275 - 33689239
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  33689275 aatcacaatgtcacaatgcttgtgaaagagagagaaa 33689239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 1801462 - 1801521
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  |||||||||| ||||||||||||||||||||||||||    
T  1801462 gggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaa 1801521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 47492063 - 47492122
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  ||||||||||||||||||||||||||| |||||||||    
T  47492063 gggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgaaaaagagagaaa 47492122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 47677295 - 47677330
Alignment:
Q  103 atcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||||||||||||||||||    
T  47677295 atcacaatgtcacaatgcttgtgaaagagagagaaa 47677330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 45755162 - 45755090
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagaga--aaatagccacttgtaacattgtggttgatcaatgtc 172  Q
    |||| ||| |||||||| |||||||||||||||||  ||| || |||| || |||||||||||||||||||||    
T  45755162 aatcgcaacgtcacaatccttgtgaaagagagagagaaaaaagtcactggtgacattgtggttgatcaatgtc 45755090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 50524822 - 50524765
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||| ||| |||| |||||| ||||||||||| || ||||||||||||||||||||||    
T  50524822 gtgacattggtgatattagtcaatcacaatgttacgatgcttgtgaaagagagagaaa 50524765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 55223344 - 55223295
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| ||| || ||||| |||||||||||||||||||||||||||||||    
T  55223344 agtgatattggtcaatcataatgtcacaatgcttgtgaaagagagagaaa 55223295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 43139748 - 43139784
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43139748 aatcacaatgtcagaatgcttgtgaaagagagagaaa 43139784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 134
Target Start/End: Original strand, 45103148 - 45103180
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagaga 134  Q
    |||||||||||||||||||||||||||||||||    
T  45103148 aatcacaatgtcacaatgcttgtgaaagagaga 45103180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 51046092 - 51046148
Alignment:
Q  82 tgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||| ||||||||  | ||||| |||||||||||| ||||||||||||||||||    
T  51046092 tgatattggtgacattgatcaatcataatgtcacaatgtttgtgaaagagagagaaa 51046148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Original strand, 30734442 - 30734477
Alignment:
Q  103 atcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||| |||||||    
T  30734442 atcacaatgtcacaatgcttgtgaaagatagagaaa 30734477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 41753084 - 41753027
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||| ||| |||||||| |  |||||||||| |||||||||||||||||||| |||||    
T  41753084 gtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagaaagaaa 41753027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Complemental strand, 16205769 - 16205737
Alignment:
Q  141 agccacttgtaacattgtggttgatcaatgtca 173  Q
    |||||||||| ||||||||||||||||||||||    
T  16205769 agccacttgtgacattgtggttgatcaatgtca 16205737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 158
Target Start/End: Original strand, 49727186 - 49727242
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgt 158  Q
    |||||||||||||||||  || |||||||||||| |||  ||||||||| |||||||    
T  49727186 aatcacaatgtcacaatttttatgaaagagagagtaaaatgccacttgtgacattgt 49727242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 173
Target Start/End: Complemental strand, 47762741 - 47762636
Alignment:
Q  68 ggatagcactcgggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatc 166  Q
    |||||||| | || ||||||| |||||||| || || || ||||||||||||||||||||||||||||||| |||  || ||||||||||||| ||| ||    
T  47762741 ggatagcagttggatgatattggtgacattggtcaaccataatgtcacaatgcttgtgaaagagagagaaacataaaca-ttgtaacattgtgattggtc 47762643  T
Q  167 aatgtca 173  Q
    |||||||    
T  47762642 aatgtca 47762636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 6271822 - 6271765
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| |||||||| |  |||||||||||||||||||||||||||||||||||||    
T  6271822 gtgatattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 6271765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 47404612 - 47404660
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||||||||||||||||||||||||||||||    
T  47404612 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaa 47404660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 42375132 - 42375073
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| ||||||||  | |||||||||||||||||||||||||||||||||||||    
T  42375132 gggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtgaaagagagagaaa 42375073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 89 - 136
Target Start/End: Original strand, 55090022 - 55090069
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtgaaagagagaga 136  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||    
T  55090022 agtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagaga 55090069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 25818378 - 25818448
Alignment:
Q  68 ggatagcactcgggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| |||| |||||| |||  ||||||| || |||||||||||||||||| ||||||||||||||||||    
T  25818378 ggataacacttgggtgacattgatgacattggtcaatcacaatgtcacaatgattgtgaaagagagagaaa 25818448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 23444308 - 23444344
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  23444308 aatcacaatgtcacaatgcttgtgaaagagagagaaa 23444344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 134
Target Start/End: Original strand, 26186043 - 26186087
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagaga 134  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  26186043 gtgacattggtcaatcacaatgtcacaatgcttgtgaaagagaga 26186087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 40789278 - 40789242
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  40789278 aatcacaatgtcacaatgcttgtgaaagagagagaaa 40789242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 47661941 - 47661905
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  47661941 aatcacaatgtcacaatgcttgtgaaagagagagaaa 47661905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 50384144 - 50384180
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  50384144 aatcacaatgtcacaatgcttgtgaaagagagagaaa 50384180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 52028648 - 52028612
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  52028648 aatcacaatgtcacaatgcttgtgaaagagagagaaa 52028612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 24006109 - 24006145
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| ||||||||||||||||||||||||||    
T  24006109 aatcacaatgacacaatgcttgtgaaagagagagaaa 24006145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 31430500 - 31430536
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||| |||||||||||||||    
T  31430500 aatcacaatgtcacaatgcttatgaaagagagagaaa 31430536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 45591449 - 45591485
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| |||||||||||||||||||||||||||||||    
T  45591449 aatcataatgtcacaatgcttgtgaaagagagagaaa 45591485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 49469947 - 49470007
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggtt 162  Q
    ||||||| |||||||||  ||||||||||||||||||| || ||||||| | |||||||||    
T  49469947 aatcacagtgtcacaattattgtgaaagagagagaaaaaagtcacttgtgatattgtggtt 49470007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 51265544 - 51265508
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| |||||||||||||||||||||||||||||||    
T  51265544 aatcataatgtcacaatgcttgtgaaagagagagaaa 51265508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 138
Target Start/End: Complemental strand, 35682264 - 35682229
Alignment:
Q  103 atcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||| |||||||    
T  35682264 atcacaatgtcacaatgcttgtgaaagatagagaaa 35682229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 44023038 - 44023076
Alignment:
Q  144 cacttgtaacattgtggttgatcaatgtcaataatgtca 182  Q
    |||||||||||||||||||| ||||||||| ||||||||    
T  44023038 cacttgtaacattgtggttggtcaatgtcactaatgtca 44023076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 9712929 - 9712982
Alignment:
Q  120 cttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    |||||||||  ||||||| | |||||||||| |||||||||||| |||||||||    
T  9712929 cttgtgaaaatgagagaagaaagccacttgtgacattgtggttggtcaatgtca 9712982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 28693962 - 28693998
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  28693962 aatcacaatatcacaatgtttgtgaaagagagagaaa 28693998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 53954705 - 53954673
Alignment:
Q  106 acaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||| ||||||    
T  53954705 acaatgtcacaatgcttgtgaaagagtgagaaa 53954673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Complemental strand, 55090108 - 55090072
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    ||||||||| || ||||||||||||||||||||||||    
T  55090108 agtgacattggtcaatcacaatgtcacaatgcttgtg 55090072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 138
Target Start/End: Original strand, 14229370 - 14229428
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| ||| |||||||| || |||||||||||||||||||||||||||||||||||||    
T  14229370 ggtgacattggtgacattggtcaatcacaatgtcacaatgcttgtgaaagagagagaaa 14229428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 43402369 - 43402435
Alignment:
Q  107 caatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    |||||||| ||| ||||||||| |||||||||| | | |||||| ||||||||||||||||||||||    
T  43402369 caatgtcataatccttgtgaaaaagagagaaaaaatcgacttgtgacattgtggttgatcaatgtca 43402435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 15011392 - 15011343
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  15011392 agtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 15011343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 16514523 - 16514487
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  16514523 aatcacaatgtcacaatgcttgtgaaagagagagaaa 16514487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 138
Target Start/End: Complemental strand, 2894073 - 2894026
Alignment:
Q  91 tgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||| || ||||||| |||||||||||||||||||||||||||||    
T  2894073 tgacattggtcaatcacagtgtcacaatgcttgtgaaagagagagaaa 2894026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 6217240 - 6217299
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  |||||||||| ||||||||||||||||||||||||||    
T  6217240 gggtgacattggtgacattggccaatcacaatgccacaatgcttgtgaaagagagagaaa 6217299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 37961826 - 37961769
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| ||||||||    |||||||||| ||||||||||||||||||||||||||    
T  37961826 gtgatatttgtgacattgaccaatcacaatgccacaatgcttgtgaaagagagagaaa 37961769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 2828683 - 2828647
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||| |||||||||||||||    
T  2828683 aatcacaatgtcacaatgcttctgaaagagagagaaa 2828647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 6722050 - 6722014
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||||||||    
T  6722050 aatcacaatgtcacaatgtttgtgaaagagagagaaa 6722014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 38933686 - 38933650
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| |||||||||||||||||||||||||||||||    
T  38933686 aatcataatgtcacaatgcttgtgaaagagagagaaa 38933650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 29925586 - 29925645
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| |||||||| |    ||||||||||| |||||||||||||||||||||||    
T  29925586 gggtgatattggtgacattggcccctcacaatgtcagaatgcttgtgaaagagagagaaa 29925645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 189
Target Start/End: Original strand, 14892344 - 14892386
Alignment:
Q  147 ttgtaacattgtggttgatcaatgtcaataatgtcatccaact 189  Q
    ||||||||||||| |||||||||||||  ||||||||||||||    
T  14892344 ttgtaacattgtgattgatcaatgtcaccaatgtcatccaact 14892386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 14464581 - 14464622
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtgaaaga 130  Q
    ||||||||| || ||||||||||||||||| |||||||||||    
T  14464581 agtgacattggtcaatcacaatgtcacaatacttgtgaaaga 14464622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 24116035 - 24115990
Alignment:
Q  86 attagtgacattagttaatcacaatgtcacaatgcttgtgaaagag 131  Q
    |||||||| ||| || |||||||||||| |||||||||||||||||    
T  24116035 attagtgatattggtcaatcacaatgtcgcaatgcttgtgaaagag 24115990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 14470631 - 14470667
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||  ||||||||||||||||||||||||    
T  14470631 aatcacaatgttgcaatgcttgtgaaagagagagaaa 14470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 37762040 - 37762076
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||| |||||||||||||||||| |||||    
T  37762040 aatcacaatgtcgcaatgcttgtgaaagagaaagaaa 37762076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 13043577 - 13043520
Alignment:
Q  81 gtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| |||||||| | |||||||||| |||||||||||||||||||||||||||    
T  13043577 gtgatattggtgacattggctaatcacaatatcacaatgcttgtgaaagagagagaaa 13043520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 12343222 - 12343163
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  |||||||||||||||||||||||||||||||||||||    
T  12343222 gggtgagattggtgacattggccaatcacaatgtcacaatgcttgtgaaagagagagaaa 12343163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 24587477 - 24587523
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    |||||| |||||||||||| || ||||||||||||||||||||||||    
T  24587477 gggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtg 24587523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 551192 - 551240
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||||||    
T  551192 gtgacattggtcaatcacaatgccacaatgtttgtgaaagagagagaaa 551240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 10521888 - 10521924
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||| |||||||||||||||    
T  10521888 aatcacaatgtcacaatgcttatgaaagagagagaaa 10521924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 134
Target Start/End: Complemental strand, 17751000 - 17750969
Alignment:
Q  103 atcacaatgtcacaatgcttgtgaaagagaga 134  Q
    ||||||||||||||||||||||||||||||||    
T  17751000 atcacaatgtcacaatgcttgtgaaagagaga 17750969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 24618617 - 24618676
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| ||||||||  | ||||||||||||| ||||||| |||||||||||||||    
T  24618617 gggtgacattggtgacattgatcaatcacaatgtcataatgcttatgaaagagagagaaa 24618676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 178706 - 178662
Alignment:
Q  129 gagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||||| | |||||| ||| ||||||||||||||||||||||    
T  178706 gagagagaagaaagccacatgtgacattgtggttgatcaatgtca 178662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 2315343 - 2315379
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  2315343 aatcacaatgtcacaatgtttgtgaaagagagcgaaa 2315379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 7063 - 7122
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||| |||||  |||||||||||||||||||||||||||||||||||||    
T  7063 gggtgacattggtgatattagccaatcacaatgtcacaatgcttgtgaaagagagagaaa 7122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 31159972 - 31159914
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| |||||||| |  ||||| |||||||||||||||||||||||||||||||    
T  31159972 ggtgatattggtgacattcgccaatcataatgtcacaatgcttgtgaaagagagagaaa 31159914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 45191146 - 45191269
Alignment:
Q  82 tgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatcaatgtcaataatgt 180  Q
    ||||||| ||||||||  |||||||||||| |||||||||| ||||||||||||||| | |  || |||||||||| || ||| |||||||||  ||| |    
T  45191146 tgatattggtgacattgattaatcacaatgccacaatgcttatgaaagagagagaaacacaaaca-ttgtaacattttgattggtcaatgtcaccaatat 45191244  T
Q  181 catccaactataatgtcatccaagta 206  Q
    ||||||||| | |||||| |||||||    
T  45191245 catccaactct-atgtcacccaagta 45191269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 5033260 - 5033224
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  5033260 aatcacaatgtcacaatgcttgtgaaagagagagaaa 5033224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 5667192 - 5667086
Alignment:
Q  106 acaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatcaatgtcaataatgtcatccaactataatgtcatccaag 204  Q
    ||||||||| ||||||||||||||||||||||| | |  || |||| |||||||| |||| ||||||||  |||||||||||||| | |||||| |||||    
T  5667192 acaatgtcataatgcttgtgaaagagagagaaatacaagca-ttgtgacattgtgattgaccaatgtcaccaatgtcatccaactct-atgtcacccaag 5667095  T
Q  205 tactacccg 213  Q
    | |||||||    
T  5667094 tgctacccg 5667086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 6296720 - 6296668
Alignment:
Q  86 attagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||| ||| | ||||||||||| |||||||||||||||||||    
T  6296720 attagtgacattagtcaattataatgtcacaatacttgtgaaagagagagaaa 6296668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 34229752 - 34229704
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| || ||||||||| |||||||||||||||||||||||||||    
T  34229752 gtgacattggtcaatcacaatatcacaatgcttgtgaaagagagagaaa 34229704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 35441008 - 35441044
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  35441008 aatcacaatgtcacaatgcttgtgaaagagagagaaa 35441044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 37618766 - 37618835
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||||||||||||| ||||| | ||||||||||||  |||||||||||||||||| || | ||||||||    
T  37618766 aatcacaatgtcacaatccttgtaagagagagagaaaa--gccacttgtaacattgtgtttcaccaatgtca 37618835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 8243414 - 8243463
Alignment:
Q  89 agtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||  | |||||||||| ||||||||||||||||||||||||||    
T  8243414 agtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 8243463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 35031653 - 35031690
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaaa 139  Q
    |||||||||||| |||||||||||||||||||||||||    
T  35031653 aatcacaatgtcgcaatgcttgtgaaagagagagaaaa 35031690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 10086856 - 10086820
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10086856 aatcacaatgtcacaatgtttgtgaaagagagagaaa 10086820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 33841630 - 33841666
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||| |||||||||||||||||||||||||||||    
T  33841630 aatcacattgtcacaatgcttgtgaaagagagagaaa 33841666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 138
Target Start/End: Complemental strand, 8796543 - 8796485
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||| ||||||||    ||||| ||||||||||||||||||||||| |||||||    
T  8796543 ggtgatattggtgacattgaccaatcaaaatgtcacaatgcttgtgaaagatagagaaa 8796485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 34229657 - 34229703
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    |||||| ||||||||||| ||| ||||||||||||| ||||||||||    
T  34229657 gggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtg 34229703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 8796439 - 8796484
Alignment:
Q  80 ggtgatattagtgacattagttaatcacaatgtcacaatgcttgtg 125  Q
    ||||||||| |||| ||| || ||||||||||||||||||||||||    
T  8796439 ggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtg 8796484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 13470090 - 13470017
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttg 163  Q
    |||||||| || ||||||||||| ||||| ||| | |||||||||||||| || ||| ||| |||| |||||||    
T  13470090 gtgacattggtcaatcacaatgttacaatacttataaaagagagagaaaaaagtcacatgtgacatcgtggttg 13470017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 4958717 - 4958662
Alignment:
Q  82 tgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||    |||||||| |||||||| |||||||||||||||||||    
T  4958717 tgatattagtgacattgaccaatcacaa-gtcacaatacttgtgaaagagagagaaa 4958662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 34541842 - 34541878
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  34541842 aatcataatatcacaatgcttgtgaaagagagagaaa 34541878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 2312 - 2276
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaa 2276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 2312 - 2276
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  2312 aatcacaatgtcacaatgcttgtgaaagagagagaaa 2276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 63856 - 63820
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  63856 aatcacaatgtcacaatgcttgtgaaagagagagaaa 63820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 138
Target Start/End: Original strand, 7671938 - 7671986
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  7671938 gtgacattagccaatcacaatgccacaatgcttgtgaaagagagagaaa 7671986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 15027641 - 15027605
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||||||||||||||||    
T  15027641 aatcacaatgtcacaatgcttgtgaaagagagagaaa 15027605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 4290667 - 4290608
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| |||||||| |  ||||||||||||||||| |||||||||||||||||||    
T  4290667 gggtgacattggtgacattggccaatcacaatgtcacaattcttgtgaaagagagagaaa 4290608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 48000710 - 48000769
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| ||| ||||||||  | |||||||||| ||||||||||||||||||||||||||    
T  48000710 gggtgacattggtgacattgatcaatcacaatgccacaatgcttgtgaaagagagagaaa 48000769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 90 - 136
Target Start/End: Complemental strand, 4649433 - 4649387
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagaga 136  Q
    |||||||| || |||||||||||||| ||||||||||||||||||||    
T  4649433 gtgacattggtcaatcacaatgtcacgatgcttgtgaaagagagaga 4649387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 41018267 - 41018370
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa-atagccacttgtaacattgtggttgatcaatgtcaataatgtcatccaactataatgtcatc 200  Q
    |||||||||||| |||||||||||||||||||||||| |||  || ||||  ||||||| ||| |||||||||  ||||||| |||||| | |||||| |    
T  41018267 aatcacaatgtcccaatgcttgtgaaagagagagaaacataagca-ttgtggcattgtgattggtcaatgtcaccaatgtcacccaactct-atgtcacc 41018364  T
Q  201 caagta 206  Q
    ||||||    
T  41018365 caagta 41018370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 6225553 - 6225633
Alignment:
Q  91 tgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgt 171  Q
    |||||||| | ||||||||||||||  | ||| |||||||||||||||| ||||| ||||   ||||||||||| ||||||    
T  6225553 tgacattaatcaatcacaatgtcacggtccttatgaaagagagagaaaaaagccatttgtggtattgtggttgaccaatgt 6225633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 11016968 - 11016932
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||||||||    
T  11016968 aatcacaatgtcacaatgtttgtgaaagagagagaaa 11016932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 27028832 - 27028868
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27028832 aatcacaatgtcacaatgcttctgaaagagagagaaa 27028868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 42628394 - 42628358
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||| ||||||||||||||||||||||||    
T  42628394 aatcacaatgtcccaatgcttgtgaaagagagagaaa 42628358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Original strand, 6980943 - 6980987
Alignment:
Q  129 gagagagaaaatagccacttgtaacattgtggttgatcaatgtca 173  Q
    ||||||||| | |||||||||||||||||||||||  ||||||||    
T  6980943 gagagagaagaaagccacttgtaacattgtggttggccaatgtca 6980987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 10419569 - 10419521
Alignment:
Q  90 gtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||| | | |||||||||||||||  |||||||||||||||||||    
T  10419569 gtgacattggctgatcacaatgtcacaaaacttgtgaaagagagagaaa 10419521  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 29053353 - 29053389
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| | ||||||||||||||||||||||||    
T  29053353 aatcacaatgcctcaatgcttgtgaaagagagagaaa 29053389  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 34854734 - 34854770
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||| |||||||||||||||||||| |||||    
T  34854734 aatcacaatgccacaatgcttgtgaaagagatagaaa 34854770  T

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Target: scaffold0481 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 2926 - 2962
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2926 aatcacaatgtcacaatgtttgtgaaagagagagaaa 2962  T

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Target: scaffold0016 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 49742 - 49778
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    ||||||||||||||||||||||||||||| |||||||    
T  49742 aatcacaatgtcacaatgcttgtgaaagaaagagaaa 49778  T

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Target: scaffold0161 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 27236 - 27295
Alignment:
Q  79 gggtgatattagtgacattagttaatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||| |||||||| ||| |  ||||||||||||| ||| |||||||||||||||||||    
T  27236 gggtgacattagtgatattggccaatcacaatgtcataattcttgtgaaagagagagaaa 27295  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 19161 - 19197
Alignment:
Q  102 aatcacaatgtcacaatgcttgtgaaagagagagaaa 138  Q
    |||||||||||||||||||||||| |||| |||||||    
T  19161 aatcacaatgtcacaatgcttgtggaagaaagagaaa 19197  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 507797 - 507733
Alignment:
Q  120 cttgtgaaagagagagaaaatagccacttgtaacattgtggttgatcaatgtcaataatgtcatc 184  Q
    ||||||||||||| |||| | | |||||||||| |||||| ||| |||||||||  |||||||||    
T  507797 cttgtgaaagagaaagaagaaatccacttgtaatattgtgattggtcaatgtcaccaatgtcatc 507733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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