View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_125 (Length: 249)
Name: NF1459_high_125
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_125 |
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Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 23293852 - 23293703
Alignment:
| Q |
76 |
gcaaaatatcttctttttcttaacaataaaagaagatcatacaaaaagaatgaaacaaatgtgctcttatttcttaccactattcttaattcaataccat |
175 |
Q |
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| T |
23293852 |
gcaaaatatcttctttttcttaacaataaaagaagatcatacaaaaagaatgaaacaaatgtgctcttatttcttaccactattcttaattcaataccat |
23293753 |
T |
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| Q |
176 |
aaaaccaaaatttaggtcacacaaaccaaatcgcggaagttcacaattca |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23293752 |
aaaaccaaaatttaggtcacacaaaccaaatcgcggaagttcacaattca |
23293703 |
T |
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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 21330416 - 21330486
Alignment:
| Q |
7 |
tcgaataatatagatttaaaatatacatgtgatattgttgtttttcgaattcagaaaagtatgtttatagc |
77 |
Q |
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||||| ||| || |||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
21330416 |
tcgaacaatgtatatttaaaatatacaagtgatattgttgtttttcgatttcagaaaagtatctttatagc |
21330486 |
T |
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