View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_127 (Length: 248)
Name: NF1459_high_127
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_127 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 39341240 - 39341476
Alignment:
| Q |
12 |
gaacaagagcaaggcatagaagagataggaaattataattaagccattcaaaaagcagccatatagttgttgcagcggttaaaacagcagcagagatctt |
111 |
Q |
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| T |
39341240 |
gaacaagagcaaggcatagaagagataggaaattataattaagccattcaaaaagcagccatatagttgttgcagcggttaaaacagcagcagagatctt |
39341339 |
T |
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| Q |
112 |
cttgtccctccataacaagacatcagcagctacgtcattcaaagtataaaaaagaaaacagatttaaaagctgaagccaatatgatagattttacaggaa |
211 |
Q |
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| T |
39341340 |
cttgtccctccataacaagacatcagcagctacgtcattcaaagtataaaaaagagaacagatttaaaagctgaagccaatatgatagattttacaggaa |
39341439 |
T |
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| Q |
212 |
attcactagaattgtcattgacatacattttccacca |
248 |
Q |
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| T |
39341440 |
attcactagaattgtcattgacatacattttccacca |
39341476 |
T |
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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 17070479 - 17070581
Alignment:
| Q |
41 |
aaattataattaagccattcaaaaagcagccatatagttgttgcagcggttaaaacagcagcagagatcttcttgtccctccataacaagacatcagcag |
140 |
Q |
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||||||||||| ||||||||||| |||| ||||| | |||||||| | ||||||| | |||||| ||| |||||| |||||||||||| ||||| |||| |
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| T |
17070479 |
aaattataattgagccattcaaatagcacccatacaattgttgcaccagttaaaaaactagcagaaatcgtcttgttcctccataacaaaacatccgcag |
17070578 |
T |
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| Q |
141 |
cta |
143 |
Q |
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||| |
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| T |
17070579 |
cta |
17070581 |
T |
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