View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_129 (Length: 248)
Name: NF1459_high_129
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_129 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 39 - 230
Target Start/End: Complemental strand, 8647862 - 8647671
Alignment:
| Q |
39 |
ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaatccctgaggtagtgtaaag |
138 |
Q |
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| T |
8647862 |
ccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcagaaagaggcaatccctgaggtagtgtaaag |
8647763 |
T |
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| Q |
139 |
taaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatc |
230 |
Q |
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| T |
8647762 |
taaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaatc |
8647671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 228
Target Start/End: Complemental strand, 19722179 - 19721970
Alignment:
| Q |
17 |
gagaggcggagacttttt-tgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagag |
115 |
Q |
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| T |
19722179 |
gagaggcggagaccttttctgagccacgagtgagtgtttaactcctggaagaaagaaatatcgttgtaccccaaggatctccaaatacaagcagaaagag |
19722080 |
T |
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| Q |
116 |
g-caatccctgaggtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcat |
214 |
Q |
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| T |
19722079 |
ggcaatcccggaggcactgtaaa----acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcgctt |
19721984 |
T |
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| Q |
215 |
tagtggggagtgaa |
228 |
Q |
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|||||||||||||| |
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| T |
19721983 |
tagtggggagtgaa |
19721970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 4491224 - 4491308
Alignment:
| Q |
32 |
ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg |
116 |
Q |
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|||||||||| |||||| |||| || |||| ||| ||| ||||| ||||||||||||||||||| || |||||| |||||||||| |
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| T |
4491224 |
ttttgagccacgagtgagtgtttaaatcctagaataacacaatagcattgtaccccaaggatcttcacatacaatcataaagagg |
4491308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 29312684 - 29312488
Alignment:
| Q |
30 |
ttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagaggcaa-tccctgagg |
128 |
Q |
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|||||||||||| |||||| |||| ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| || ||||||||| |
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| T |
29312684 |
ttttttgagccacgagtgagtgtttaactcatggaagaacgcaataccattgttccc-aaggatctccaaatacaagcagaaagagggaaatccctgagg |
29312586 |
T |
|
| Q |
129 |
tagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggagtgaa |
228 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | ||||||||||| ||| |
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| T |
29312585 |
cagtctaaa----acatcttccacatgatcattacatctataacacataggagacaaaaccataccgcgacggtgcaaaagcactttagtggggagcgaa |
29312490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 230
Target Start/End: Original strand, 12288498 - 12288691
Alignment:
| Q |
35 |
tgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaagagg-caatccctgaggtagtg |
133 |
Q |
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||||||| |||||| |||| |||||||||||||| | |||| |||| |||||||| |||||||||||||||||| ||| ||| ||||||| |||| |||| |
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| T |
12288498 |
tgagccacgagtgagtgtttaactcctggaagaaagaaatatcattttaccccaatgatctccaaatacaagcagaaatagggcaatcccggaggcagtg |
12288597 |
T |
|
| Q |
134 |
taaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagt-ggggagtgaatc |
230 |
Q |
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|||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
12288598 |
taaa----acatcttccacatgatcattacatctatagcacacaggagacaaaaccataccgcgatggtgcaaaagcgctttagtgggggagtgaatc |
12288691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 224
Target Start/End: Original strand, 3632427 - 3632618
Alignment:
| Q |
29 |
cttttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgag |
127 |
Q |
| |
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||||||||||||| |||||| ||| |||||||||||||| ||| | | |||||||||||| |||||||||||||||||| | ||| | |||||||| || |
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| T |
3632427 |
cttttttgagccacgagtgagtgtgtaactcctggaagaa-gcagtgctattgtaccccaaagatctccaaatacaagcagagagatgacaatccctaag |
3632525 |
T |
|
| Q |
128 |
gtagtgtaaagtaaacatcttccacatgatcattacatctataacacataggagacaaaactataccgcgatggtgcaaaagcgcattagtggggag |
224 |
Q |
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|||| | |||||| ||| ||||||||||||||||||| |||| |||| ||||| | ||| |||||||||| |||| || ||||||||||| |
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| T |
3632526 |
acagtgca----aaacattttcaacatgatcattacatctatggcacaaaggatacaaagccatatcgcgatggtgtaaaaatgctttagtggggag |
3632618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 2976798 - 2976740
Alignment:
| Q |
17 |
gagaggcggagac-ttttttgagccatgagtgaatgttcaactcctggaagaacgcaat |
74 |
Q |
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||||||| ||||| |||||||||||| |||||| |||| | |||||||||||||||||| |
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| T |
2976798 |
gagaggcagagaccttttttgagccacgagtgagtgtttagctcctggaagaacgcaat |
2976740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 4870713 - 4870802
Alignment:
| Q |
78 |
attgtaccccaaggatctccaaatacaagcataaaga-ggcaatccctgaggtagtgtaaagtaaacatcttccacatgatcattacatctata |
170 |
Q |
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||||||||||||||||||||| ||||| ||| | ||| || ||||| |||| |||||| |||||||||| ||||| |||||||||||||| |
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| T |
4870713 |
attgtaccccaaggatctccacatacatgcagagagagggaaatcctcgaggcagtgta----aaacatcttcaacatggtcattacatctata |
4870802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 37035989 - 37035912
Alignment:
| Q |
32 |
ttttgagccatgagtgaatgttcaactcctggaagaacgcaataccattgtaccccaaggatctccaaatacaagcat |
109 |
Q |
| |
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||||||||||| ||||| ||| ||||| |||||||| ||| ||| |||||||| |||||||||||| ||||| |||| |
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| T |
37035989 |
ttttgagccataagtgagtgtgtaactcatggaagaaagcagtactattgtaccacaaggatctccacatacatgcat |
37035912 |
T |
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