View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_13 (Length: 540)
Name: NF1459_high_13
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 21032870 - 21033279
Alignment:
| Q |
1 |
atctattacataattcttctctctaaagcatttatccatcttcccatctatcttttcttttacgcgtttggatcatctgtagccgtcgtgccattcacta |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21032870 |
atctgttacataattcttctctctaaagcatttatccatcttcccatctaccttttcttttacgcgtttggatcatctgcagccgtcgtgccattcacta |
21032969 |
T |
|
| Q |
101 |
cgaaatgggtgactgttggctgcagatgatccaaaactaaacctttcacccttatttgtgtatttctaccgtagagattagagagcaagagaaagaatct |
200 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21032970 |
cgaaatgggtgactgtttgctgcagatgatccaaaactaaacctttcacccttatttttgtatttctaccgtagagactagagagcaagagaaagaatct |
21033069 |
T |
|
| Q |
201 |
atataggtgagtcaacgctacttgatcttgaacgatattattgtaggatcttcttgggtctctcttatctttccatcaaaatctcaatgattagattaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21033070 |
atataggtgagtcaacgctacttgatcttgaacgatattactgtaggatcttcttgggtctctcttatctttccatcaaaatctcaatgattagattaat |
21033169 |
T |
|
| Q |
301 |
ctaagaattgcaagattaaaatcttaa-ctttagatcaattcaaatgcctgataattgattaaagtgggtaaagggacccgagaggatttggatccaatg |
399 |
Q |
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||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
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| T |
21033170 |
ctaagaattgcaagattaaaatcttaaccattagatcaattgaaatgcctgataattgattaaagtgggtaaagggacctgagagtatttggatccaatg |
21033269 |
T |
|
| Q |
400 |
taaagctcta |
409 |
Q |
| |
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|||||||||| |
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| T |
21033270 |
taaagctcta |
21033279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 411 - 532
Target Start/End: Original strand, 21033306 - 21033428
Alignment:
| Q |
411 |
atagcttcttaatgtgacattagacaaattgttgattaccaggaaattaatgagtgtattggtttcgatgnnnnnnnnnnnnncttcttataataaggat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21033306 |
atagcttcttaatgtgacattagacaaattgttgattaccaggaaattaacaagtgtattggtttcgatgttttttggtttttcttcttataataaggat |
21033405 |
T |
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| Q |
511 |
caga-gggagtaccagaattatc |
532 |
Q |
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|||| ||||||||| |||||||| |
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| T |
21033406 |
cagaggggagtaccggaattatc |
21033428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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