View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_131 (Length: 246)
Name: NF1459_high_131
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_131 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 33486393 - 33486289
Alignment:
| Q |
127 |
ttttacgatataaatcatgacatacttcaaacgataaaaatggatattccatttgttaattttaaaagtaaattttatgaattcaaataaaccttatgca |
226 |
Q |
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| T |
33486393 |
ttttacgatataaatcatgacatacttcaaacgataaaaatggatattccgtttgttaattttaaaagtaaattttatgaattcaaataaaccttatgca |
33486294 |
T |
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| Q |
227 |
gttta |
231 |
Q |
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||||| |
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| T |
33486293 |
gttta |
33486289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 33491142 - 33491017
Alignment:
| Q |
1 |
ataatactatttcagtttagccctgttatattttactctccttttgtattcattaatattattatcaatggaatatgagctaagcttggtttgcctnnnn |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33491142 |
ataatactatttcagtctagccctgttatattttactctctttttgtattca-taatattattatcaatggaatatgagataagcttggtttgcctaaaa |
33491044 |
T |
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| Q |
101 |
nnntctaaatcatgacatgcttattat |
127 |
Q |
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| T |
33491043 |
aaatctaaatcatgacatgcttattat |
33491017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 104 - 231
Target Start/End: Complemental strand, 33499504 - 33499371
Alignment:
| Q |
104 |
tctaaatcatgacatgcttattattttacgatataaatcatgacat----acttcaaacgataaaaatggatattccatttgt--taattttaaaagtaa |
197 |
Q |
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|||||||| ||||| |||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| |
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| T |
33499504 |
tctaaatcctgacaagcttcatattttacgatatacatcatgacatacttacttcaaacgaaggaaatggatattccatttgtactaattttcaaagtaa |
33499405 |
T |
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| Q |
198 |
attttatgaattcaaataaaccttatgcagttta |
231 |
Q |
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| T |
33499404 |
actttattaatttaaataaaccatatgcagttta |
33499371 |
T |
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