View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_139 (Length: 237)
Name: NF1459_high_139
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_139 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27329297 - 27329075
Alignment:
| Q |
1 |
tgcactgcaattgtggctgcatttacatctctacaaatgatcatgaaaacaattaatgttggcacatttctctgcgattttttgatatttaggagataga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329297 |
tgcactgcaattgtggctgcatttacatctctacaactgatcatgaaaacaattaatgttggcacatttctctgcgattttttgatatttaggagataga |
27329198 |
T |
|
| Q |
101 |
gatgcaaccaaaaaatatataataatgggatgagataaaatttgcacgcaattatgggccattcttttggttaatctattctggtgttcctggttaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27329197 |
gatgcaaccaaaaaatatataataatgggatgagataaaatttgcacgcaattatgggccattcttttggttaatctattctggtgttcctggttaataa |
27329098 |
T |
|
| Q |
201 |
aggtcttacaaacatgaagttag |
223 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
27329097 |
aggtcttgcaaacatgaagttag |
27329075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University