View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_14 (Length: 530)
Name: NF1459_high_14
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 297
Target Start/End: Complemental strand, 13766676 - 13766383
Alignment:
| Q |
7 |
tcgaagaatatccaccataccagtcaaaagttcttcttcacagacaaaaaacaccgt--ctccttgcttgagccctttttgaatgtctatttcttaggta |
104 |
Q |
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| T |
13766676 |
tcgaaggatatccaccataccagtcaaaagttcttcctcatagacaaaaaacaccgtgtctccttgcttgagccctttttgaatatcgatttcttaggta |
13766577 |
T |
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| Q |
105 |
ggagaacaattgaccaggacagcaggctacctgtaaacacacacactata-tccacgaccccatctcccctcaaaacaataatctcatttacagccacaa |
203 |
Q |
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| T |
13766576 |
ggagaacaattgaccaggatagcaggctacttataaacacacacactctagtccacgaccccatctcccatcaaaacaataatctcatttatagccacaa |
13766477 |
T |
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| Q |
204 |
ccccatctacatgttgtctccctctaacgaaggccgattggttggcgaaaataattttctccatgatatgagctaaacgcaaagcaaggacctt |
297 |
Q |
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| T |
13766476 |
ccccatctacatgttgtctccctctaacgaaggtcgattggtttacgaaaataatcttctccatgatatgagctaaacgcaaagcaaggacctt |
13766383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 297 - 515
Target Start/End: Complemental strand, 13766347 - 13766129
Alignment:
| Q |
297 |
tcaggctaaaatcccctaaaagtatgggatattcaaccttagagatcaaggtaacaaagtattaggagaagatcttaagcagatttgctggagtataaaa |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13766347 |
tcaggctaaaatcccctaaaagtatgggatattcaaccttagagatcaaggtaagaaagtattaggagaagatcttaagcagatttgctggagtataaaa |
13766248 |
T |
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| Q |
397 |
ttgctcaaacataaccttgacatcagctttcaacatatttcgcaaccgtgtaaagaagttgagattaaatccgtccggtatagggatctcgttaccatcc |
496 |
Q |
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| T |
13766247 |
ttgctcaaacataatctcgatgtcagctttcaacatatttcgcaaccgtataaagaagttgagattaaatccgtccggcctagggctctcgttaccatcc |
13766148 |
T |
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| Q |
497 |
acactagaaaccaccaatt |
515 |
Q |
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| T |
13766147 |
agactagaaaccaccaatt |
13766129 |
T |
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