View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_148 (Length: 232)
Name: NF1459_high_148
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_148 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 15000680 - 15000461
Alignment:
| Q |
1 |
caatctcctatttcggcctttcgaaagaggtgttttttctcatatcttgatgacaaaactccagatttatttacttcttgatccttcatattttcaaagc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
15000680 |
caatctcctatttcggcctttcgaaagaggtgttttttctcatatctcgatgacaaaactccaaatttatttacttcttgatccttcatattttcaaagc |
15000581 |
T |
|
| Q |
101 |
aacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttttcacttgataattggc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15000580 |
aacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttttcacttgataattggc |
15000481 |
T |
|
| Q |
201 |
atcttgtttaagttcttcat |
220 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
15000480 |
atcttgtttaagttcttcat |
15000461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 15751599 - 15751461
Alignment:
| Q |
82 |
tccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattc |
181 |
Q |
| |
|
|||||||| |||| ||||| ||||||||| |||||||| | ||||| | ||||||||||||||||||||| ||||||||| ||||||| |||||||||| |
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|
| T |
15751599 |
tccttcatctttttaaagctacataaattgataatattctcaatcacaccattactttcctcttcttgagtgaaaggacaatccaagaactctgcaattc |
15751500 |
T |
|
| Q |
182 |
ttttcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
|||| || ||| |||| ||| || |||||| ||||||| |
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|
| T |
15751499 |
ttttgacatgagaatttccattttctttaagatcttcat |
15751461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 15067176 - 15067038
Alignment:
| Q |
82 |
tccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattc |
181 |
Q |
| |
|
||||||||| | ||||||| ||||| || || ||||||| ||||| || |||| |||||||||||| ||| |||||| | |||| ||||||||||||| |
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|
| T |
15067176 |
tccttcatactctcaaagctgcataacttgattatattttcaatcactccattattttcctcttcttcagtgaaaggaaatcccacaaattctgcaattc |
15067077 |
T |
|
| Q |
182 |
ttttcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
||||| ||| |||| |||||| |||||| ||||||| |
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| T |
15067076 |
ttttcgtgtgaaaattaacatcttctttaaggtcttcat |
15067038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 15214267 - 15214402
Alignment:
| Q |
85 |
ttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttt |
184 |
Q |
| |
|
|||||| | ||||||| ||||| || || ||||||| ||||| || |||| |||||||||||||||| |||||| |||| |||||||||||||||| |
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|
| T |
15214267 |
ttcatactctcaaagctgcataacttgattatattttcaatcactccattattttcctcttcttgagtgaaaggaattcccacaaattctgcaattcttt |
15214366 |
T |
|
| Q |
185 |
tcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
|| ||| |||| |||||| |||||| ||||||| |
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|
| T |
15214367 |
tcgtgtgaaaattaacatcttctttaaggtcttcat |
15214402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 13033851 - 13033713
Alignment:
| Q |
82 |
tccttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattc |
181 |
Q |
| |
|
||||||||| | ||||||| ||||| || || ||||||| || || || |||| |||||||||||||||| |||||| | |||| || |||||||||| |
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|
| T |
13033851 |
tccttcatactctcaaagctgcataacttgattatattttcaaccactccattattttcctcttcttgagtgaaaggaaatcccacaaactctgcaattc |
13033752 |
T |
|
| Q |
182 |
ttttcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
|||| | ||| |||| |||||| |||||| ||||||| |
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|
| T |
13033751 |
ttttgatgtgaaaattaacatcttctttaaggtcttcat |
13033713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 15030150 - 15030049
Alignment:
| Q |
84 |
cttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattctt |
183 |
Q |
| |
|
||||||| | ||||||| ||||| || || ||||||| ||||| | |||| |||||||||||||||| |||||| | |||| ||||||||||||||| |
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|
| T |
15030150 |
cttcatactctcaaagctgcataacttgattatattttcaatcacttcattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattctt |
15030051 |
T |
|
| Q |
184 |
tt |
185 |
Q |
| |
|
|| |
|
|
| T |
15030050 |
tt |
15030049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 15047853 - 15047756
Alignment:
| Q |
123 |
aatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttttcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
||||| || |||| |||||||||||||||| |||||| | |||| |||||||||||||||||| ||| |||| |||||| |||||| ||||||| |
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|
| T |
15047853 |
aatcactccattattttcctcttcttgagtgaaaggaaatcccacaaattctgcaattcttttcgtgtgaaaattaacatcttctttaaggtcttcat |
15047756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 15052974 - 15052874
Alignment:
| Q |
85 |
ttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttt |
184 |
Q |
| |
|
|||||| | ||||||| ||||| || || ||||||| ||||| || |||| |||||||||||||||| |||||| || | |||||||||||||||| |
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|
| T |
15052974 |
ttcatactctcaaagctgcataacttgattatattttcaatcactccattattttcctcttcttgagtgaaaggaattccaacaaattctgcaattcttt |
15052875 |
T |
|
| Q |
185 |
t |
185 |
Q |
| |
|
| |
|
|
| T |
15052874 |
t |
15052874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 220
Target Start/End: Original strand, 1617913 - 1618041
Alignment:
| Q |
92 |
tttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttttcacttg |
191 |
Q |
| |
|
||||||||| ||||||||| |||||||||| ||||| | |||||||||||| ||||||||||||||||||||||| || ||||||||||||||||| || |
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|
| T |
1617913 |
tttcaaagctacataaattgataatattttcaatcacaccattactttcctcctcttgagtaaaaggacaacccaaaaactctgcaattcttttcacatg |
1618012 |
T |
|
| Q |
192 |
ataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
| |||| ||||| |||||| ||||||| |
|
|
| T |
1618013 |
aaaatttatatcttctttaagatcttcat |
1618041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 85 - 220
Target Start/End: Original strand, 1626456 - 1626591
Alignment:
| Q |
85 |
ttcatattttcaaagcaacataaattaataatattttgaatcattctattactttcctcttcttgagtaaaaggacaacccaagaattctgcaattcttt |
184 |
Q |
| |
|
||||| |||||||||| ||||||||| || ||||||| ||||| | ||||||||| || ||||||||||||||||||||||| || ||||||||||||| |
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|
| T |
1626456 |
ttcatcttttcaaagctacataaattgattatattttcaatcacaccattactttcttcctcttgagtaaaaggacaacccaaaaactctgcaattcttt |
1626555 |
T |
|
| Q |
185 |
tcacttgataattggcatcttgtttaagttcttcat |
220 |
Q |
| |
|
| || ||| |||| ||||| |||||| ||||||| |
|
|
| T |
1626556 |
taacatgaaaatttatatcttctttaagatcttcat |
1626591 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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