View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_high_16 (Length: 525)

Name: NF1459_high_16
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_high_16
NF1459_high_16
[»] chr6 (5 HSPs)
chr6 (215-460)||(4183706-4183951)
chr6 (215-460)||(4744545-4744790)
chr6 (460-506)||(4183633-4183679)
chr6 (96-145)||(2332690-2332739)
chr6 (461-508)||(4744472-4744520)
[»] chr1 (7 HSPs)
chr1 (303-460)||(51382140-51382297)
chr1 (264-460)||(51857762-51857958)
chr1 (346-455)||(51221896-51222005)
chr1 (346-398)||(51763692-51763744)
chr1 (354-435)||(25611720-25611801)
chr1 (303-460)||(51781991-51782148)
chr1 (376-440)||(45693604-45693668)
[»] scaffold0244 (1 HSPs)
scaffold0244 (108-170)||(16291-16353)
[»] scaffold0171 (1 HSPs)
scaffold0171 (93-170)||(723-800)
[»] scaffold0015 (1 HSPs)
scaffold0015 (310-395)||(41147-41232)


Alignment Details
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 215 - 460
Target Start/End: Complemental strand, 4183951 - 4183706
Alignment:
Q  215 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 314  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| || |||||||| ||    
T  4183951 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacacaactgcctcccactaactctcctccgttacttccattcga 4183852  T
Q  315 tcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaa 414  Q
    |||||||||||||||| ||| |  |||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||| |||  ||||||||||    
T  4183851 tcttgtggcagaaatcctatgctgtctccctgtgaaacacctccttcaactccgttgcgtttgcaagtcctggaattctcttatctcccatgattccaaa 4183752  T
Q  415 tttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 460  Q
    || |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4183751 ttcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4183706  T

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Target: chr6; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 215 - 460
Target Start/End: Complemental strand, 4744790 - 4744545
Alignment:
Q  215 ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccaaaaccctaacaccactgcctcccaccaactctcctccatttcttccatttga 314  Q
    ||||||||||||||| ||||| | |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| || |||||||| ||    
T  4744790 ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccactaactctcctccgttacttccattcga 4744691  T
Q  315 tcttgtggcagaaatcttatcccttctccctgtgaaaca-cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaa 413  Q
    |||||||||||||||| | | |  ||||||||||||||| ||||||| ||||| |||||||||||||||| | |||||||||||| |||  |||||||||    
T  4744690 tcttgtggcagaaatcctctgctgtctccctgtgaaacaccctccttcaactccgttgcgtttgcaagtcct-gaattctcttatctcccatgattccaa 4744592  T
Q  414 atttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 460  Q
    ||| |||| ||| ||||||||  ||||||||||||||||||||||||    
T  4744591 attcgccaagaaccaccttcgtttgtccacctccaaccacgaccgcc 4744545  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 4183679 - 4183633
Alignment:
Q  460 cccttgttccacttatctggatgctcaatctcctctatttttagttc 506  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||    
T  4183679 cccttgttctacttatctggatgctcaatctcctctattttcagttc 4183633  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 2332739 - 2332690
Alignment:
Q  96 ggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtct 145  Q
    ||||||||||| || | |||||| |||||| |||||||||||||||||||    
T  2332739 ggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtct 2332690  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 461 - 508
Target Start/End: Complemental strand, 4744520 - 4744472
Alignment:
Q  461 ccttgttccacttatctgg-atgctcaatctcctctatttttagttctg 508  Q
    |||||||| |||||||||| |||| |||||||||||||||| |||||||    
T  4744520 ccttgttctacttatctgggatgcccaatctcctctattttcagttctg 4744472  T

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Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 303 - 460
Target Start/End: Complemental strand, 51382297 - 51382140
Alignment:
Q  303 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 402  Q
    |||||| || ||||| |||||||||||| | | ||| ||||| ||||||||||||||| ||||| ||||||| |||||||||||||||| |||||| ||     
T  51382297 tcttccgttcgatctggtggcagaaatcctgtgcctgctccccgtgaaacacctccttcaactccgttgcgtctgcaagtcatggaattatcttatctct 51382198  T
Q  403 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 460  Q
      ||||||||| || |||| |||||| |||||  |||| |||||||||||||||||||    
T  51382197 catgattccaatttcgccaagaagcaacttcgtttgtcaacctccaaccacgaccgcc 51382140  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 264 - 460
Target Start/End: Original strand, 51857762 - 51857958
Alignment:
Q  264 aaccctaacaccactgcctcccaccaactctcctccatttcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaa 363  Q
    ||||| |||||||| |||||| ||||| |||| |||||||||| | || ||||| ||| |||||||  | | ||  ||||| |||||| | |||||| ||    
T  51857762 aacccaaacaccaccgcctcctaccaattctcttccatttctttcgttcgatctcgtgacagaaattctgtgccagctccccgtgaaaaatctccttcaa 51857861  T
Q  364 ctcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 460  Q
    ||| ||||| | ||||||||||||||||||||||| ||   ||||||| ||||  | ||||||||||||||| |||| |||||||||| ||||||||    
T  51857862 ctccgttgcatctgcaagtcatggaattctcttatctctcatgattccgaattcactatgaagcaccttcgcttgtcaacctccaacctcgaccgcc 51857958  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 455
Target Start/End: Complemental strand, 51222005 - 51221896
Alignment:
Q  346 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtccacct 445  Q
    |||||||||||| || ||||| | ||| | ||||||||||||||||||||||| ||   |||||  || ||||||| |||||| |||||| |||| ||||    
T  51222005 gtgaaacacctcattcaactccgctgcatctgcaagtcatggaattctcttatctctcatgatttaaattttgccaagaagcaacttcgcttgtcaacct 51221906  T
Q  446 ccaaccacga 455  Q
     |||||||||    
T  51221905 tcaaccacga 51221896  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 398
Target Start/End: Complemental strand, 51763744 - 51763692
Alignment:
Q  346 gtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttat 398  Q
    |||||||| |||||| ||||| ||||||| |||||||||||||||||||||||    
T  51763744 gtgaaacatctccttcaactctgttgcgtctgcaagtcatggaattctcttat 51763692  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 435
Target Start/End: Complemental strand, 25611801 - 25611720
Alignment:
Q  354 cctccttaaactcagttgcgtttgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgc 435  Q
    ||||||| || || ||||||| |||||||||||||||||||| || || | |||| |||| |||| || ||| |||||||||    
T  25611801 cctccttcaattctgttgcgtctgcaagtcatggaattctctaatatcgaatgatcccaattttgtcaagaaacaccttcgc 25611720  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 460
Target Start/End: Original strand, 51781991 - 51782148
Alignment:
Q  303 tcttccatttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctcttatttcc 402  Q
    |||||| || ||||| || ||||||||| | |  || ||||| |||||||| ||| |||||||| |  | || || |||||||||||||||||||| |||    
T  51781991 tcttccgttcgatctggttgcagaaatcctgtgtctgctccccgtgaaacatctcattaaactccgccgtgtctgtaagtcatggaattctcttatctcc 51782090  T
Q  403 attgattccaaatttgccatgaagcaccttcgcctgtccacctccaaccacgaccgcc 460  Q
      |||||| ||||| || |  || ||| ||||| |||| ||||| |||||||| ||||    
T  51782091 catgattctaaattcgctaaaaaacactttcgcttgtcaacctctaaccacgatcgcc 51782148  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 45693668 - 45693604
Alignment:
Q  376 tgcaagtcatggaattctcttatttccattgattccaaatttgccatgaagcaccttcgcctgtc 440  Q
    |||||||| ||||||||||| || || |||||| |||||||||| | ||| ||||||||| ||||    
T  45693668 tgcaagtcgtggaattctctaatctcaattgatcccaaatttgctaagaatcaccttcgcatgtc 45693604  T

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Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 16291 - 16353
Alignment:
Q  108 ctttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 170  Q
    |||| ||||||||||||| ||||||||||||||||||||||||| || ||||| |||||||||    
T  16291 ctttgaagagggccaataaaatcatccaagaaaggtctaatacgcctaactagtactttggaa 16353  T

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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 723 - 800
Alignment:
Q  93 ttaggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa 170  Q
    ||||||||||||||  |||  |||||||||||| ||||||||||||||||| | |||| ||| || || |||||||||    
T  723 ttaggaatgaaagagttttggagagggccaataaaatcatccaagaaaggtttgatacatctcacaagaactttggaa 800  T

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Target: scaffold0015 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 41232 - 41147
Alignment:
Q  310 tttgatcttgtggcagaaatcttatcccttctccctgtgaaacacctccttaaactcagttgcgtttgcaagtcatggaattctct 395  Q
    |||||||||||||| |||||| |||  |  ||||||||||||  ||||||  || || ||||||| ||||||||||||||||||||    
T  41232 tttgatcttgtggctgaaatcctatgtcgactccctgtgaaattcctcctacaattccgttgcgtctgcaagtcatggaattctct 41147  T

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