View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_163 (Length: 216)
Name: NF1459_high_163
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_163 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 110620 - 110432
Alignment:
| Q |
13 |
agcacagacaatcctgttatgtaaaagtgtgattacatcagaattcttacctaccaacatatctataattaaaatagcggattcacttgaaaagagagaa |
112 |
Q |
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| T |
110620 |
agcacacacaatcctgttatgtgaaagtgtgatgacatcagaattgttacctaccaacatatctataattaaaatagcggtttcacttgaaaagagagaa |
110521 |
T |
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| Q |
113 |
aataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaacaagaaaaatat |
201 |
Q |
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| T |
110520 |
aataaaaaccacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaacaagaaaaatat |
110432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 20 - 189
Target Start/End: Original strand, 20647258 - 20647427
Alignment:
| Q |
20 |
acaatcctgttatgtaaaagtgtgattacatcagaattcttacctaccaacatatctataattaaaatagcggattcacttgaaaagagagaaaataaaa |
119 |
Q |
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| T |
20647258 |
acaatcatgttatgtaaaagtgtaatgacatcagaattcttacctaccaacatatctataattaaaatagcggtttcacttgaaaagagagaaaataaaa |
20647357 |
T |
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| Q |
120 |
accacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20647358 |
accacataatatgccattataaatgtgtattatacttgcacagaataacaatcacgccacatgttataaa |
20647427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 63661 - 63559
Alignment:
| Q |
64 |
taccaacatatctataattaaaatagcggattcacttgaaaagagagaaaataaaaa-ccac-ataatatgccattataaatgtgtattatacttgcaca |
161 |
Q |
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||||||||||| ||||| |||||||| || ||||||||||||| | |||||||||| | || ||||||||| |||||||| | ||||||||||||||| |
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| T |
63661 |
taccaacatatatataagtaaaatagtggtttcacttgaaaagcaacaaaataaaaatctactataatatgctattataaaggcttattatacttgcaca |
63562 |
T |
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| Q |
162 |
gaa |
164 |
Q |
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||| |
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| T |
63561 |
gaa |
63559 |
T |
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