View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_164 (Length: 215)
Name: NF1459_high_164
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_164 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 47941422 - 47941602
Alignment:
| Q |
15 |
attatactatatagctaagaaacaactagaaaagtatgtgttaattaatggttgatcttgactttgagggagggtgatcgatcactaaccgcccaacctg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47941422 |
attatactatatagctaagaaacaactagaaaagtatgtgttaattaatggttgatcttgactttgagggagggtgatcgatcactaaccgcccaacctg |
47941521 |
T |
|
| Q |
115 |
cttcgatggtttcaatttcaagaccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47941522 |
cttcgatggtttcaatttcaagaccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacct |
47941602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 98 - 185
Target Start/End: Original strand, 47920769 - 47920859
Alignment:
| Q |
98 |
actaaccgcccaacctgcttcgatggtttcaa---tttcaagaccattggcagccttaagccatatttgagcagtagtgaaatcttctggt |
185 |
Q |
| |
|
|||||||| ||| |||||||||||| |||||| | ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
47920769 |
actaaccgtccagcctgcttcgatgctttcaaaattatcaggaccattggcagccttaagccatatttgagcagtagtaaaatcttctggt |
47920859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 138 - 195
Target Start/End: Original strand, 47910203 - 47910260
Alignment:
| Q |
138 |
ccattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaacct |
195 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
47910203 |
ccattggtagccttaagccacatttgagcagtagtgaaatcttctggtttttcaacct |
47910260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 47947463 - 47947519
Alignment:
| Q |
137 |
accattggcagccttaagccatatttgagcagtagtgaaatcttctggtcgttcaac |
193 |
Q |
| |
|
||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| |
|
|
| T |
47947463 |
accattgttagccttaagccacatttgagccgtagtgaaatcttctggttgttcaac |
47947519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 47929151 - 47929191
Alignment:
| Q |
145 |
cagccttaagccatatttgagcagtagtgaaatcttctggt |
185 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
47929151 |
cagccttaagccacatttgagcggtagtgaaatcttctggt |
47929191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University