View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_169 (Length: 210)
Name: NF1459_high_169
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_169 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 1148718 - 1148519
Alignment:
| Q |
11 |
atgaatgtcaaactcctcataannnnnnnaatgttggtgtatgtctaaggctaaattcaaacctaaaacatcggttgtgttagaagagatatttatcatc |
110 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
1148718 |
atgaatgtcaaactcctcataaattttttaatgttggtgtatgtctaagactaaattcgaacctaaaatattgattgtgttagaagagatatttatcatc |
1148619 |
T |
|
| Q |
111 |
tcatttaagcactcttagacattctcctctaatttcaaaattctaacggtctatggatagtttataacgtcgtgcataaatgaagcttttccaaagtttg |
210 |
Q |
| |
|
|||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
1148618 |
tcatttaaacgctcttagacattctcctctagtttcaaaattctaaccgtctatggatagtttataacctcgtgcataaatgaagctttcccaaagtttg |
1148519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University