View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_170 (Length: 208)
Name: NF1459_high_170
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_170 |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 74; Significance: 4e-34; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 135 - 208
Target Start/End: Original strand, 18048 - 18121
Alignment:
| Q |
135 |
ctaatgagtaaagagggactacttcagagttcagaaagggcagtgaagaaatgaatgttagaaaaaatgataac |
208 |
Q |
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| T |
18048 |
ctaatgagtaaagagggactacttcagagttcagaaagggcagtgaagaaatgaatgttagaaaaaatgataac |
18121 |
T |
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Target: scaffold0086; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 17915 - 17971
Alignment:
| Q |
9 |
gagatgaataatatctagcaagtaaaatatactgtatatcttaattattagtataat |
65 |
Q |
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| T |
17915 |
gagatgaataatatctagcaagtaaaatatactgtatatcttaattattagtataat |
17971 |
T |
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