View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_173 (Length: 206)
Name: NF1459_high_173
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_173 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 33079953 - 33079777
Alignment:
| Q |
13 |
caaaggggacaaacaaagtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacg |
112 |
Q |
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| T |
33079953 |
caaaagggacaaacaaagtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcaagtttgtaaacaagtactgaaatg |
33079854 |
T |
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| Q |
113 |
atcgcattgaaaatcctctccatgtattcttaaacttctttgcatacaagatataaaaacctaccaatatcatagat |
189 |
Q |
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| T |
33079853 |
atcgcattgaaaatcctctccatgtattcttaaacttctttgcatacaagatataaaaacctaccaatatcatagat |
33079777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 33069985 - 33069809
Alignment:
| Q |
13 |
caaaggggacaaacaaagtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacg |
112 |
Q |
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| T |
33069985 |
caaaagggacaaaaaaagtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcaagtttgtaaacaagtactgaaatg |
33069886 |
T |
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| Q |
113 |
atcgcattgaaaatcctctccatgtattcttaaacttctttgcatacaagatataaaaacctaccaatatcatagat |
189 |
Q |
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| T |
33069885 |
attgcattgaaaatcccctccatgtattcttaaacttctttgcatacaagatataaaaacctactaatatcatagat |
33069809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 50 - 189
Target Start/End: Complemental strand, 33048867 - 33048728
Alignment:
| Q |
50 |
cataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacgatcgcattgaaaatcctctccatgtattcttaaactt |
149 |
Q |
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| T |
33048867 |
cataccataccattgctgcagagggaagagctagtttaatgtttgtaaacaagtactgaaatgattcctttgaaaatcctctccatgtattctcaaactt |
33048768 |
T |
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| Q |
150 |
ctttgcatacaagatataaaaacctaccaatatcatagat |
189 |
Q |
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| T |
33048767 |
ctttgcatacaagacataagaacctaccaatatcatagat |
33048728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 185
Target Start/End: Complemental strand, 33062004 - 33061846
Alignment:
| Q |
27 |
aaagtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacgatcgcattgaaaat |
126 |
Q |
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||||||| |||| | ||||| ||||||||||| |||||| ||||| || | ||||||||||||||||| ||||| ||| | ||| ||| |||| || ||| |
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| T |
33062004 |
aaagtgagaggcgtatagaagctcataccataccattgcagcagaaggcaaagctagtttcatgtttgcaaacaggtaatcaaatgattgcatggagaat |
33061905 |
T |
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| Q |
127 |
cctctccatgtattcttaaacttctttgcatacaagatataaaaacctaccaatatcat |
185 |
Q |
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| T |
33061904 |
cctctccatgtattcttaaacttctttgcatacattacataaaatcctaacattatcat |
33061846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 33088420 - 33088290
Alignment:
| Q |
30 |
gtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacgatcgcattgaaaatcct |
129 |
Q |
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||||||||| ||||||||||||||||||| |||| | || || | | ||||||||||||||||| ||||||||| | ||| ||| ||||||||||||| |
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| T |
33088420 |
gtgaaaggcatttagaaactcataccataccattacggcggaagtcaaagctagtttcatgtttggaaacaagtaataaaatgattgcattgaaaatccc |
33088321 |
T |
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| Q |
130 |
ctccatgtattcttaaacttctttgcataca |
160 |
Q |
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| T |
33088320 |
ctccacgtattctcaaacttctttgcataca |
33088290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 33095916 - 33095786
Alignment:
| Q |
30 |
gtgaaaggcttttagaaactcataccatagcattgctgcagagggaagagctagtttcatgtttgtaaacaagtactgaaacgatcgcattgaaaatcct |
129 |
Q |
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||||||||| ||||||||||||||||||| |||| | || || | | ||||||||||||||||| ||||||||| | ||| ||| ||||||||||||| |
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| T |
33095916 |
gtgaaaggcatttagaaactcataccataccattacggcggaagtcaaagctagtttcatgtttggaaacaagtaataaaatgattgcattgaaaatccc |
33095817 |
T |
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| Q |
130 |
ctccatgtattcttaaacttctttgcataca |
160 |
Q |
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| T |
33095816 |
ctccacgtattctcaaacttctttgcataca |
33095786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 78 - 189
Target Start/End: Complemental strand, 18485964 - 18485853
Alignment:
| Q |
78 |
agctagtttcatgtttgtaaacaagtactgaaacgatcgcattgaaaatcctctccatgtattcttaaacttctttgcatacaagatataaaaacctacc |
177 |
Q |
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||||||||| | ||||||||||||||||||||| ||| |||||||| |||||||||| |||| |||||||||||||||||||||| |||||| |||||| |
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| T |
18485964 |
agctagttttaggtttgtaaacaagtactgaaatgattccattgaaattcctctccatatatttttaaacttctttgcatacaagacataaaatcctacc |
18485865 |
T |
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| Q |
178 |
aatatcatagat |
189 |
Q |
| |
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||||||| |||| |
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| T |
18485864 |
aatatcaaagat |
18485853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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