View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_175 (Length: 204)
Name: NF1459_high_175
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_175 |
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Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 33651798 - 33651969
Alignment:
| Q |
15 |
agcagagacattcatatttaccaaattatttcttaactatagtggatgatcatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaattt |
114 |
Q |
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| T |
33651798 |
agcagagacattcatatttaccaaattatttcttaactatagtggatgattatgcaaaactcattctgccaatgcaagtttgtgagaactattaaaattt |
33651897 |
T |
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| Q |
115 |
aatttgataataatg-nnnnnnnnaaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggtttt |
185 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33651898 |
aatttgataataatgtttttttttaaaaataaaaatatgtaatgtaatgcaagtgtcttctcacatggtttt |
33651969 |
T |
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