View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_19 (Length: 511)
Name: NF1459_high_19
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 54 - 493
Target Start/End: Original strand, 48254801 - 48255239
Alignment:
| Q |
54 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
153 |
Q |
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| T |
48254801 |
taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct |
48254900 |
T |
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| Q |
154 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
253 |
Q |
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| T |
48254901 |
aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag |
48255000 |
T |
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| Q |
254 |
aaaatagtatgttaatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaattttcgaaccattttaaaattgttagtgcca |
353 |
Q |
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| T |
48255001 |
aaattagtatgttaatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaattttcaaaccattttaaaattgttagtgcca |
48255099 |
T |
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| Q |
354 |
gttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttggttgagctgaatagcaaggga |
453 |
Q |
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| T |
48255100 |
gttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttgggtgagctgaatagcaaggga |
48255199 |
T |
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| Q |
454 |
gaaagggctgatcccagtgacaaacaaagaagtattaggt |
493 |
Q |
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| T |
48255200 |
gaaagggctgatcccagtgacaaacaaagaagtattaggt |
48255239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 39282357 - 39282245
Alignment:
| Q |
59 |
aatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggtt |
158 |
Q |
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||||| |||||| || ||||| |||||||| || ||||| ||||||| |||| || | ||| |||| ||||| | |||| |||| |||||||||| ||| |
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| T |
39282357 |
aatagtcataaggtatccttaccttaatggtggcagcaatctgtgaaataactagaagcagatactcgtgcactctacctatgccgatgactgctacgtt |
39282258 |
T |
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| Q |
159 |
ggaagtgaaatca |
171 |
Q |
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| T |
39282257 |
ggaagtgaaatca |
39282245 |
T |
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