View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_high_22 (Length: 490)

Name: NF1459_high_22
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_high_22
NF1459_high_22
[»] chr7 (12 HSPs)
chr7 (17-432)||(31690949-31691352)
chr7 (350-382)||(22759064-22759096)
chr7 (350-382)||(27708934-27708966)
chr7 (352-387)||(25507241-25507276)
chr7 (306-345)||(42656459-42656498)
chr7 (350-380)||(28702639-28702669)
chr7 (306-339)||(2999141-2999174)
chr7 (308-345)||(28178913-28178950)
chr7 (306-360)||(12110292-12110343)
chr7 (350-378)||(31832193-31832221)
chr7 (306-338)||(39591554-39591586)
chr7 (350-378)||(39630264-39630292)
[»] chr2 (10 HSPs)
chr2 (307-348)||(33197327-33197368)
chr2 (350-386)||(6772695-6772731)
chr2 (306-345)||(17952788-17952827)
chr2 (306-345)||(31461382-31461421)
chr2 (306-345)||(32098395-32098434)
chr2 (306-353)||(40837515-40837562)
chr2 (352-386)||(6768583-6768617)
chr2 (351-380)||(10285758-10285787)
chr2 (306-338)||(29633023-29633055)
chr2 (306-338)||(33576681-33576713)
[»] chr8 (13 HSPs)
chr8 (350-386)||(31167861-31167897)
chr8 (306-382)||(12224986-12225059)
chr8 (306-380)||(26820112-26820182)
chr8 (306-345)||(14482146-14482185)
chr8 (306-345)||(31915356-31915395)
chr8 (306-345)||(39392748-39392787)
chr8 (304-338)||(29699205-29699239)
chr8 (352-381)||(12291784-12291813)
chr8 (349-386)||(35565183-35565220)
chr8 (306-338)||(8799356-8799388)
chr8 (306-338)||(11119086-11119118)
chr8 (306-338)||(40728505-40728537)
chr8 (304-344)||(44348432-44348472)
[»] chr1 (12 HSPs)
chr1 (350-386)||(6933117-6933153)
chr1 (306-339)||(39777613-39777646)
chr1 (306-381)||(14737792-14737872)
chr1 (350-382)||(32555703-32555735)
chr1 (350-381)||(48146173-48146204)
chr1 (306-348)||(46499941-46499983)
chr1 (307-345)||(50319236-50319274)
chr1 (349-382)||(4019748-4019781)
chr1 (306-338)||(15360845-15360877)
chr1 (306-338)||(36641826-36641858)
chr1 (350-382)||(41638453-41638485)
chr1 (306-338)||(49517021-49517053)
[»] chr5 (16 HSPs)
chr5 (306-339)||(10280663-10280696)
chr5 (350-382)||(30845201-30845233)
chr5 (306-345)||(7096214-7096253)
chr5 (350-381)||(14257346-14257377)
chr5 (306-345)||(37063161-37063200)
chr5 (265-338)||(912696-912768)
chr5 (306-339)||(10303751-10303784)
chr5 (306-339)||(14295456-14295489)
chr5 (306-339)||(28586853-28586886)
chr5 (350-383)||(35055091-35055124)
chr5 (350-383)||(35071833-35071866)
chr5 (306-339)||(35095870-35095903)
chr5 (350-379)||(36638644-36638673)
chr5 (306-338)||(29117017-29117049)
chr5 (307-339)||(29590828-29590860)
chr5 (306-338)||(35135749-35135781)
[»] chr3 (10 HSPs)
chr3 (350-383)||(4534499-4534532)
chr3 (306-381)||(20192693-20192765)
chr3 (306-346)||(49587003-49587043)
chr3 (306-345)||(1395615-1395654)
chr3 (350-381)||(20874458-20874489)
chr3 (307-345)||(905058-905096)
chr3 (350-379)||(8933670-8933699)
chr3 (306-338)||(26990685-26990717)
chr3 (350-382)||(53892009-53892041)
chr3 (306-338)||(54775079-54775111)
[»] scaffold0590 (1 HSPs)
scaffold0590 (306-345)||(1161-1200)
[»] scaffold0275 (1 HSPs)
scaffold0275 (306-345)||(2775-2814)
[»] chr4 (13 HSPs)
chr4 (310-345)||(30338683-30338718)
chr4 (306-345)||(51044546-51044585)
chr4 (350-384)||(7730508-7730542)
chr4 (307-337)||(9319283-9319313)
chr4 (306-344)||(10192229-10192267)
chr4 (306-339)||(4071832-4071865)
chr4 (306-339)||(20936089-20936122)
chr4 (350-383)||(24068801-24068834)
chr4 (351-388)||(34621813-34621850)
chr4 (350-379)||(41162211-41162240)
chr4 (310-360)||(6364081-6364128)
chr4 (306-338)||(19422369-19422401)
chr4 (353-381)||(52645572-52645600)
[»] scaffold0286 (1 HSPs)
scaffold0286 (352-390)||(16026-16064)
[»] chr6 (8 HSPs)
chr6 (352-390)||(2161051-2161089)
chr6 (356-390)||(33284129-33284163)
chr6 (307-348)||(281936-281977)
chr6 (350-379)||(2023787-2023816)
chr6 (306-339)||(30865432-30865465)
chr6 (354-386)||(2732376-2732408)
chr6 (306-338)||(5328925-5328957)
chr6 (306-338)||(24836286-24836318)
[»] scaffold0024 (1 HSPs)
scaffold0024 (350-382)||(23806-23838)


Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 17 - 432
Target Start/End: Original strand, 31690949 - 31691352
Alignment:
Q  17 tgtttataggataaaggagaagtgataatttacttatagttatttgaatttattccttcagctttgacaaaagatggatgatactaaagttggtatgaga 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31690949 tgtttataggataaaggagaagtgataatttacttatagttatttgaatttattccttcagttttgacaaaagatggatgatactaaagttggtatgaga 31691048  T
Q  117 agagttagatcagttaaagatgttattagtctatatgatgataggaatcataggactgctgatagttcttcattgaagaaaactcagatagacttcgagg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691049 agagttagatcagttaaagatgttattagtctatatgatgataggaatcataggactgctgatagttcttcattgaagaaaactcagatagacttcgagg 31691148  T
Q  217 cggatttctcagcggtaagttcagannnnnnnccacaagctttctagaatagattataaaaacaacttatagctcatgtggaatcgaattttgactttat 316  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  31691149 cggatttctcagcggtaagttcagatttttttccacaagctttctagaatagattataaaaacaacttatagctcatgtggaatcgaattttgac----- 31691243  T
Q  317 tctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgag 416  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31691244 -------tttgttctagaaataggttatagatcataagtgcttaattaagttgtttatccaaacagagtcatctaatattgtatatgcattattattgag 31691336  T
Q  417 gcattcttttgttaac 432  Q
    ||||||||||||||||    
T  31691337 gcattcttttgttaac 31691352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 22759096 - 22759064
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||||||||||||||||||||||||||    
T  22759096 ataagtgcttaattaagttgtttatccaaacag 22759064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 27708934 - 27708966
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||||||||||||||||||||||||||    
T  27708934 ataagtgcttaattaagttgtttatccaaacag 27708966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 25507276 - 25507241
Alignment:
Q  352 aagtgcttaattaagttgtttatccaaacagagtca 387  Q
    ||||||||||||||||||||||||||||||| ||||    
T  25507276 aagtgcttaattaagttgtttatccaaacagggtca 25507241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 42656498 - 42656459
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  42656498 tttgactttattttatcttttgttatagaaatagcttata 42656459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 380
Target Start/End: Complemental strand, 28702669 - 28702639
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaac 380  Q
    |||||||||||||||||||||||||||||||    
T  28702669 ataagtgcttaattaagttgtttatccaaac 28702639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 2999174 - 2999141
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  2999174 tttgactttattttatcttttgttatagaaatag 2999141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 345
Target Start/End: Complemental strand, 28178950 - 28178913
Alignment:
Q  308 tgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  28178950 tgactttattttatcttttgttatagaaatagcttata 28178913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 12110343 - 12110292
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagatcataagtgctta 360  Q
    |||||||||||| |||||| ||| |||||||||||||||   |||||||||||||    
T  12110343 tttgactttattttatcttgtgtaatagaaataggttat---tcataagtgctta 12110292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 31832221 - 31832193
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaa 378  Q
    |||||||||||||||||||||||||||||    
T  31832221 ataagtgcttaattaagttgtttatccaa 31832193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 39591554 - 39591586
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  39591554 tttgactttattttatcttttgttatagaaata 39591586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 378
Target Start/End: Complemental strand, 39630292 - 39630264
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaa 378  Q
    |||||||||||||||||||||||||||||    
T  39630292 ataagtgcttaattaagttgtttatccaa 39630264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 33197327 - 33197368
Alignment:
Q  307 ttgactttattctatcttttgttatagaaataggttatagat 348  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  33197327 ttgactttattctatcttttgttatagaaatagcttatagat 33197368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 6772695 - 6772731
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacagagtc 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  6772695 ataagtgcttaattaagttgtttatccaaacagagtc 6772731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 17952788 - 17952827
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  17952788 tttgactttattttatcttttgttatagaaatagcttata 17952827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 31461421 - 31461382
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  31461421 tttgactttattttatcttttgttatagaaatagcttata 31461382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 32098395 - 32098434
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  32098395 tttgactttattttatcttttgttatagaaatagcttata 32098434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 40837515 - 40837562
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagatcataa 353  Q
    |||||||||| | ||||||||||||||||||||| ||||| |||||||    
T  40837515 tttgactttaatttatcttttgttatagaaatagcttatacatcataa 40837562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 6768583 - 6768617
Alignment:
Q  352 aagtgcttaattaagttgtttatccaaacagagtc 386  Q
    ||||||||||||||||||||| |||||||||||||    
T  6768583 aagtgcttaattaagttgtttgtccaaacagagtc 6768617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 380
Target Start/End: Complemental strand, 10285787 - 10285758
Alignment:
Q  351 taagtgcttaattaagttgtttatccaaac 380  Q
    ||||||||||||||||||||||||||||||    
T  10285787 taagtgcttaattaagttgtttatccaaac 10285758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 29633055 - 29633023
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||||||| ||||||||||||||||    
T  29633055 tttgactttattctattttttgttatagaaata 29633023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 33576681 - 33576713
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  33576681 tttgactttattgtatcttttgttatagaaata 33576713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Complemental strand, 31167897 - 31167861
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacagagtc 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  31167897 ataagtgcttaattaagttgtttatccaaacagagtc 31167861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 382
Target Start/End: Original strand, 12224986 - 12225059
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||||| ||||||||||  ||||||||  |||||   ||||||  ||||||||||||||||||||||||||    
T  12224986 tttgactttattttatcttttgtcttagaaataacttata---cataagctcttaattaagttgtttatccaaacag 12225059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 26820182 - 26820112
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaac 380  Q
    |||||||||||| ||||||||||||||||||||  |||||     |||| |||||||| ||||||||||||||||    
T  26820182 tttgactttattttatcttttgttatagaaataacttata----ctaagcgcttaattgagttgtttatccaaac 26820112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 14482185 - 14482146
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  14482185 tttgactttattttatcttttgttatagaaatagtttata 14482146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 31915356 - 31915395
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  31915356 tttgactttattctatcttttgttatagatatagcttata 31915395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 39392748 - 39392787
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  39392748 tttgactttattttatcttttgttatagaaatagtttata 39392787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 338
Target Start/End: Complemental strand, 29699239 - 29699205
Alignment:
Q  304 attttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||||| ||||||||||||||||||||    
T  29699239 attttgactttattttatcttttgttatagaaata 29699205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 381
Target Start/End: Original strand, 12291784 - 12291813
Alignment:
Q  352 aagtgcttaattaagttgtttatccaaaca 381  Q
    ||||||||||||||||||||||||||||||    
T  12291784 aagtgcttaattaagttgtttatccaaaca 12291813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 386
Target Start/End: Complemental strand, 35565220 - 35565183
Alignment:
Q  349 cataagtgcttaattaagttgtttatccaaacagagtc 386  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  35565220 cataagtacttaatgaagttgtttatccaaacagagtc 35565183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 8799388 - 8799356
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  8799388 tttgactttattttatcttttgttatagaaata 8799356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 11119086 - 11119118
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  11119086 tttgactttattttatcttttgttatagaaata 11119118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 40728505 - 40728537
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  40728505 tttgactttattttatcttttgttatagaaata 40728537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 344
Target Start/End: Complemental strand, 44348472 - 44348432
Alignment:
Q  304 attttgactttattctatcttttgttatagaaataggttat 344  Q
    ||||||||||||||  |||||||||||||||||||| ||||    
T  44348472 attttgactttattacatcttttgttatagaaatagcttat 44348432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 350 - 386
Target Start/End: Original strand, 6933117 - 6933153
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacagagtc 386  Q
    |||||||||||||||||||||||||||||||||||||    
T  6933117 ataagtgcttaattaagttgtttatccaaacagagtc 6933153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 39777646 - 39777613
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    ||||||||||||||||||||||||||||||||||    
T  39777646 tttgactttattctatcttttgttatagaaatag 39777613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 14737792 - 14737872
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggtt-----atagatcataagtgcttaattaagttgtttatccaaaca 381  Q
    |||||||||||| ||||||||||||||||||||  ||     ||| || ||||||||||||||||| || |||||||||||    
T  14737792 tttgactttattttatcttttgttatagaaataacttagcacatatatgataagtgcttaattaagctgcttatccaaaca 14737872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 32555735 - 32555703
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||||||||||||||||||||||||||    
T  32555735 ataagtgcttaattaagttgtttatccaaacag 32555703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 48146173 - 48146204
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaaca 381  Q
    ||||||||||||||||||||||||||||||||    
T  48146173 ataagtgcttaattaagttgtttatccaaaca 48146204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 348
Target Start/End: Original strand, 46499941 - 46499983
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagat 348  Q
    |||||||||||| |||||||| |||||||||||| ||||||||    
T  46499941 tttgactttattttatcttttcttatagaaatagcttatagat 46499983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 50319274 - 50319236
Alignment:
Q  307 ttgactttattctatcttttgttatagaaataggttata 345  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  50319274 ttgactttattttatcttttgttatagaaatagcttata 50319236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 4019748 - 4019781
Alignment:
Q  349 cataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||| |||||||||||||||||||||||    
T  4019748 cataagtgctaaattaagttgtttatccaaacag 4019781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 15360877 - 15360845
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  15360877 tttgactttattttatcttttgttatagaaata 15360845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 36641858 - 36641826
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  36641858 tttgactttattttatcttttgttatagaaata 36641826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 41638453 - 41638485
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    ||||||||||||| |||||||||||||||||||    
T  41638453 ataagtgcttaatcaagttgtttatccaaacag 41638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 49517053 - 49517021
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  49517053 tttgactttattttatcttttgttatagaaata 49517021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 10280663 - 10280696
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    ||||||||||||||||||||||||||||||||||    
T  10280663 tttgactttattctatcttttgttatagaaatag 10280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 30845233 - 30845201
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    |||||||||||||||||||||||||||||||||    
T  30845233 ataagtgcttaattaagttgtttatccaaacag 30845201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 7096214 - 7096253
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  7096214 tttgactttattttatcttttgttatagaaatagcttata 7096253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 381
Target Start/End: Complemental strand, 14257377 - 14257346
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaaca 381  Q
    ||||||||||||||||||||||||||||||||    
T  14257377 ataagtgcttaattaagttgtttatccaaaca 14257346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 37063161 - 37063200
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  37063161 tttgactttattttatcttttgttatagaaatagtttata 37063200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 912696 - 912768
Alignment:
Q  265 atagattataaaaacaacttatagctcatgtggaatcgaattttgactttattctatcttttgttatagaaata 338  Q
    |||| ||||||||||||||||| ||| || || || | ||||||||||||||| ||| || |||||||||||||    
T  912696 atagtttataaaaacaacttattgcttatatgaaaac-aattttgactttattttatattgtgttatagaaata 912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 10303784 - 10303751
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  10303784 tttgactttattttatcttttgttatagaaatag 10303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 14295489 - 14295456
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  14295489 tttgactttattttatcttttgttatagaaatag 14295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 28586853 - 28586886
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  28586853 tttgactttattttatcttttgttatagaaatag 28586886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 35055124 - 35055091
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacaga 383  Q
    |||||||||||||||||||||||| |||||||||    
T  35055124 ataagtgcttaattaagttgtttacccaaacaga 35055091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Complemental strand, 35071866 - 35071833
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacaga 383  Q
    |||||||||||||||||||||||| |||||||||    
T  35071866 ataagtgcttaattaagttgtttacccaaacaga 35071833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 35095870 - 35095903
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  35095870 tttgactttattttatcttttgttatagaaatag 35095903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Complemental strand, 36638673 - 36638644
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaa 379  Q
    ||||||||||||||||||||||||||||||    
T  36638673 ataagtgcttaattaagttgtttatccaaa 36638644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 29117017 - 29117049
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  29117017 tttgactttattttatcttttgttatagaaata 29117049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 29590828 - 29590860
Alignment:
Q  307 ttgactttattctatcttttgttatagaaatag 339  Q
    ||||||||||| |||||||||||||||||||||    
T  29590828 ttgactttattttatcttttgttatagaaatag 29590860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 35135749 - 35135781
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  35135749 tttgactttattttatcttttgttatagaaata 35135781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 4534499 - 4534532
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacaga 383  Q
    ||||||||||||||||||||||||||||||||||    
T  4534499 ataagtgcttaattaagttgtttatccaaacaga 4534532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 20192693 - 20192765
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatagatcataagtgcttaattaagttgtttatccaaaca 381  Q
    |||||||||||| |||||||||||||| |||||| |||||   ||||||  ||||||| || ||||||||||||||    
T  20192693 tttgactttattttatcttttgttatataaatagcttata---cataagcacttaattgagctgtttatccaaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 49587003 - 49587043
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttatag 346  Q
    |||||||||||| ||||||||||||||||||||| ||||||    
T  49587003 tttgactttattttatcttttgttatagaaatagcttatag 49587043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 1395654 - 1395615
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1395654 tttgactttattttatcttttgttatagaaatagcttata 1395615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 381
Target Start/End: Original strand, 20874458 - 20874489
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaaca 381  Q
    ||||||||||||||||||||||||||||||||    
T  20874458 ataagtgcttaattaagttgtttatccaaaca 20874489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 905058 - 905096
Alignment:
Q  307 ttgactttattctatcttttgttatagaaataggttata 345  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  905058 ttgactttattttatcttttgttatagaaatagcttata 905096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Complemental strand, 8933699 - 8933670
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaa 379  Q
    ||||||||||||||||||||||||||||||    
T  8933699 ataagtgcttaattaagttgtttatccaaa 8933670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 26990717 - 26990685
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  26990717 tttgactttattttatcttttgttatagaaata 26990685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 53892009 - 53892041
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    ||||||||||||||||| |||||||||||||||    
T  53892009 ataagtgcttaattaagctgtttatccaaacag 53892041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 54775111 - 54775079
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  54775111 tttgactttattttatcttttgttatagaaata 54775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 1161 - 1200
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  1161 tttgactttattttatcttttgttatagaaatagcttata 1200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Complemental strand, 2814 - 2775
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  2814 tttgactttattttatcttttgttatagaaatagcttata 2775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 345
Target Start/End: Original strand, 30338683 - 30338718
Alignment:
Q  310 actttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||||||||||||||||||||| |||||    
T  30338683 actttattctatcttttgttatagaaatagtttata 30338718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 345
Target Start/End: Original strand, 51044546 - 51044585
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttata 345  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  51044546 tttgactttattttatcttttgttatagaaatagcttata 51044585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 384
Target Start/End: Complemental strand, 7730542 - 7730508
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacagag 384  Q
    |||||||||||||||||||||||||||||| ||||    
T  7730542 ataagtgcttaattaagttgtttatccaaatagag 7730508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 337
Target Start/End: Original strand, 9319283 - 9319313
Alignment:
Q  307 ttgactttattctatcttttgttatagaaat 337  Q
    |||||||||||||||||||||||||||||||    
T  9319283 ttgactttattctatcttttgttatagaaat 9319313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 344
Target Start/End: Complemental strand, 10192267 - 10192229
Alignment:
Q  306 tttgactttattctatcttttgttatagaaataggttat 344  Q
    ||||||||||||||||||||||||||| |||||| ||||    
T  10192267 tttgactttattctatcttttgttataaaaatagtttat 10192229  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 4071865 - 4071832
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  4071865 tttgactttattttatcttttgttatagaaatag 4071832  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Original strand, 20936089 - 20936122
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  20936089 tttgactttattttatcttttgttatagaaatag 20936122  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 383
Target Start/End: Original strand, 24068801 - 24068834
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacaga 383  Q
    |||||||||||||||||||| |||||||||||||    
T  24068801 ataagtgcttaattaagttgattatccaaacaga 24068834  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 34621850 - 34621813
Alignment:
Q  351 taagtgcttaattaagttgtttatccaaacagagtcat 388  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  34621850 taagtgtttagttaagttgtttatccaaacagagtcat 34621813  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 41162211 - 41162240
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaa 379  Q
    ||||||||||||||||||||||||||||||    
T  41162211 ataagtgcttaattaagttgtttatccaaa 41162240  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 360
Target Start/End: Complemental strand, 6364128 - 6364081
Alignment:
Q  310 actttattctatcttttgttatagaaataggttatagatcataagtgctta 360  Q
    |||||||| ||||||||||||||||||||| |||||   ||||||||||||    
T  6364128 actttattttatcttttgttatagaaatagcttata---cataagtgctta 6364081  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 19422401 - 19422369
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  19422401 tttgactttattatatcttttgttatagaaata 19422369  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 381
Target Start/End: Complemental strand, 52645600 - 52645572
Alignment:
Q  353 agtgcttaattaagttgtttatccaaaca 381  Q
    |||||||||||||||||||||||||||||    
T  52645600 agtgcttaattaagttgtttatccaaaca 52645572  T

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Target: scaffold0286 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Complemental strand, 16064 - 16026
Alignment:
Q  352 aagtgcttaattaagttgtttatccaaacagagtcatct 390  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  16064 aagtgctgaattaagttgtttatccaaacacagtcatct 16026  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 2161051 - 2161089
Alignment:
Q  352 aagtgcttaattaagttgtttatccaaacagagtcatct 390  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  2161051 aagtgctgaattaagttgtttatccaaacacagtcatct 2161089  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 390
Target Start/End: Complemental strand, 33284163 - 33284129
Alignment:
Q  356 gcttaattaagttgtttatccaaacagagtcatct 390  Q
    |||||||||||||||||||||||||||| ||||||    
T  33284163 gcttaattaagttgtttatccaaacagaatcatct 33284129  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 348
Target Start/End: Original strand, 281936 - 281977
Alignment:
Q  307 ttgactttattctatcttttgttatagaaataggttatagat 348  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||    
T  281936 ttgactttattttatcttttgttataggaatagcttatagat 281977  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 379
Target Start/End: Original strand, 2023787 - 2023816
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaa 379  Q
    ||||||||||||||||||||||||||||||    
T  2023787 ataagtgcttaattaagttgtttatccaaa 2023816  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 30865465 - 30865432
Alignment:
Q  306 tttgactttattctatcttttgttatagaaatag 339  Q
    |||||||||||| |||||||||||||||||||||    
T  30865465 tttgactttattttatcttttgttatagaaatag 30865432  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 354 - 386
Target Start/End: Original strand, 2732376 - 2732408
Alignment:
Q  354 gtgcttaattaagttgtttatccaaacagagtc 386  Q
    ||||||||||||||||||||| |||||||||||    
T  2732376 gtgcttaattaagttgtttattcaaacagagtc 2732408  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 5328957 - 5328925
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  5328957 tttgactttattttatcttttgttatagaaata 5328925  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 24836286 - 24836318
Alignment:
Q  306 tttgactttattctatcttttgttatagaaata 338  Q
    |||||||||||| ||||||||||||||||||||    
T  24836286 tttgactttattttatcttttgttatagaaata 24836318  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 382
Target Start/End: Complemental strand, 23838 - 23806
Alignment:
Q  350 ataagtgcttaattaagttgtttatccaaacag 382  Q
    ||||||| |||||||||||||||||||||||||    
T  23838 ataagtgtttaattaagttgtttatccaaacag 23806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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