View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_24 (Length: 478)
Name: NF1459_high_24
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 244 - 440
Target Start/End: Complemental strand, 8901176 - 8900981
Alignment:
| Q |
244 |
tttagtttatggctccc-acgtgtaagtctcctcaccacaagatgaaaagcaaacaattccaatcaagatttaattttggatttgatgacgacgaccccc |
342 |
Q |
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| T |
8901176 |
tttagtttatgactccccacgtgtaagtctcctcaccacaagatgaaaagcaaacaattccaatcaagatttaattttggatttgatgacgacgaccc-- |
8901079 |
T |
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| Q |
343 |
attcacaacatatctgcctcaagtcctcaacataaaaacacagatcgacacgtgtcctatcaatggaccccacaagataacttctcaaacactacatt |
440 |
Q |
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| T |
8901078 |
attcacaaaatatctgcctcaagtcctcaacataaaaacacagatcgacacgtgtcctatcaatggaccccacaagataacttctcaaacactacatt |
8900981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 8901402 - 8901286
Alignment:
| Q |
6 |
ctttgttttttcacctttggttttgattgaacttcttgtctaattatggttgttctctttcagcacaccttgtgcagaagaaacgacatttatggtgtta |
105 |
Q |
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| T |
8901402 |
ctttgttttttcacctttggttttgattgaacttcttgtctaattatagttgttctctttcagtgcaccttgtgc-ggagagacggtatttatggtatta |
8901304 |
T |
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| Q |
106 |
atataagtctcattttat |
123 |
Q |
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| T |
8901303 |
atataagtctcattttat |
8901286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 42075221 - 42075274
Alignment:
| Q |
68 |
gcacaccttgtgcagaagaaacgacatttatggtgttaatataagtctcatttt |
121 |
Q |
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| T |
42075221 |
gcacgccttgtgcggaagaaacgacatgtttggtgttaatatatatctcatttt |
42075274 |
T |
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