View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_25 (Length: 477)
Name: NF1459_high_25
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 3 - 459
Target Start/End: Original strand, 51987822 - 51988278
Alignment:
| Q |
3 |
gcaaaggaatatgcagcgccacactgtttcggtgaacgaagagaatgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagca |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51987822 |
gcaaaggaatatgcagcgccacactgtttcggtgaacgaagagaatgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagca |
51987921 |
T |
|
| Q |
103 |
attaaagctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaa |
202 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51987922 |
attaaagctattcaagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaa |
51988021 |
T |
|
| Q |
203 |
agagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatgccattgcttcgcttgatagtgtttctgaagagct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51988022 |
agagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatgccattgcttcgcttgatagtgtttctgaagagct |
51988121 |
T |
|
| Q |
303 |
aaagcaaaggcttagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaa |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51988122 |
aaagcaaaggcttagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaa |
51988221 |
T |
|
| Q |
403 |
gattgcttctgattgacagaggaagaatttataaaatattttggaacattggacact |
459 |
Q |
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| T |
51988222 |
gattgcttctggttgacagaggaagaatttataaaatattttggaacattggacact |
51988278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 47 - 457
Target Start/End: Complemental strand, 52001767 - 52001357
Alignment:
| Q |
47 |
atgatgatatggaacatgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagg |
146 |
Q |
| |
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|||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||| | |||||||||| |||| |||| | ||||||| |||| || |
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| T |
52001767 |
atgatgatgtggaacatgaagttgatgatgattctccaactcctttctctaaagcagtcaaagctattcaagaacgaattactaaaagcaacaaaagggg |
52001668 |
T |
|
| Q |
147 |
gcttgttgatgaatctcttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgccttaac |
246 |
Q |
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| |||| |||||||| |||| |||| ||||||| | |||| |||||||| | | | |||| || ||||||||||| ||| |||| ||| ||||| |
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| T |
52001667 |
gtttgtcgatgaatcccttacttgggtttcaaaactgaatggtgaagattttgtgaggggaagattatgtgttccttcactgctagaaatgtctcttaaa |
52001568 |
T |
|
| Q |
247 |
attcttgcgaaccatgctgatgccattgcttcgcttgatagtgtttctgaagagctaaagcaaaggcttagcacgttgttatgtgatctgggcaaaatga |
346 |
Q |
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|||||||| || |||| ||||| |||||||||||||| |||||||||| | ||||| |||||||||||| ||||| | |||||| | ||||||| |
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| T |
52001567 |
attcttgccaatcatgttgatggacttgcttcgcttgatggtgtttctgatgcactaaaacaaaggcttagcgcgttgctttgtgattcaagaaaaatga |
52001468 |
T |
|
| Q |
347 |
atggtcactttcttgaactacttcttagtgggttttcaaatgtgattcggcttaaagattgcttctgattgacagaggaagaatttataaaatattttgg |
446 |
Q |
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||| ||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
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| T |
52001467 |
atgctcactctcttgaactacttctaagtggatttccaaatgtgattcggcttaaagattgctcttggatgacagaggaagaatttacaaaatattttgg |
52001368 |
T |
|
| Q |
447 |
aacattggaca |
457 |
Q |
| |
|
|| ||||||| |
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|
| T |
52001367 |
aaagttggaca |
52001357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 69 - 459
Target Start/End: Complemental strand, 52011610 - 52011220
Alignment:
| Q |
69 |
tgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatctcttatt |
168 |
Q |
| |
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|||||||| ||||||||||||||||||| ||||||| |||||||||| ||| |||| || ||||||| |||||||||| ||||| | ||||| ||||| |
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| T |
52011610 |
tgatgatgcttctccaacacctttctctgaagcaatcaaagctattcaggaacgaattgcgaaaagcaagaaaaaaggggttgttaaggaatcctttatt |
52011511 |
T |
|
| Q |
169 |
tggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgtgccttaacattcttgcgaaccatgctgatg |
268 |
Q |
| |
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||| | | ||| || | ||||||||||| | | ||| ||||| |||||||| ||||||||| ||| ||||| |||||||| ||||||||||||| |
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| T |
52011510 |
tgggttccgaaaagaaacggagaagatttggtgagggaaaggtttagggttccttcgttgcaagaaatgtctcttaaaattcttgctaaccatgctgatg |
52011411 |
T |
|
| Q |
269 |
ccattgcttcgcttgatagtgtttctgaagagctaaagcaaaggcttagcacgttgttatgtgatctgggcaaaatgaatggtcactttcttgaactact |
368 |
Q |
| |
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|| | |||||||||| ||||||| || ||||| || |||||||||||| ||||| |||||||| | | ||||||||| ||| ||||||||||||||| |
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| T |
52011410 |
gaatggtttcgcttgatggtgtttcggatgagctcaaacaaaggcttagcgcgttggtatgtgattcgagaaaaatgaattgtcgctttcttgaactact |
52011311 |
T |
|
| Q |
369 |
tcttagtgggttttcaaatgtgattcggcttaaagattgcttctgattgacagaggaagaatttataaaatattttggaacattggacact |
459 |
Q |
| |
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||| ||||||||| | | | ||||||||||||||||||| ||| ||||||||||||||||| | |||| |||||||| ||||||||| |
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| T |
52011310 |
tctgagtgggtttcctactcatattcggcttaaagattgctcctggttgacagaggaagaattcactaaatgttttggaatgttggacact |
52011220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 63 - 238
Target Start/End: Complemental strand, 11749425 - 11749250
Alignment:
| Q |
63 |
tgaaactgatgatggttctccaacacctttctctaaagcaattaaagctattccagaaagaatcgccaaaagcatgaaaaaagggcttgttgatgaatct |
162 |
Q |
| |
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||||| |||||||||||||||||| |||||||| || |||| |||||||||| |||| |||| ||||||| || ||||| ||| ||||||||||||| |
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| T |
11749425 |
tgaaattgatgatggttctccaactcctttctccgaaacaatcaaagctattcaagaacgaattgccaaaaccaagaaaatggggtttgttgatgaatcc |
11749326 |
T |
|
| Q |
163 |
cttatttggcattcaaaattcaatgaagaagatttggaaaagagaagctttagtgttccttcattgcaagaattgt |
238 |
Q |
| |
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||||||||| | | ||| |||| ||||||||||| || ||||| ||| |||||||||||||| ||||||||| |
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| T |
11749325 |
cttatttgggttccgaaaaggaatggagaagatttggtgaatagaaggttttgtgttccttcattggaagaattgt |
11749250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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