View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_30 (Length: 460)
Name: NF1459_high_30
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_30 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Complemental strand, 46997628 - 46997196
Alignment:
| Q |
18 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46997628 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
46997529 |
T |
|
| Q |
118 |
attgcaaactatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactg |
217 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46997528 |
attgcaaattatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccttttgtgtatcgaatggatctgttttttgatccttatactg |
46997429 |
T |
|
| Q |
218 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46997428 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
46997329 |
T |
|
| Q |
318 |
aaaagtaacttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46997328 |
aaaagtaacttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagag |
46997229 |
T |
|
| Q |
418 |
ttcatgaattcggcgtcggtgtgtagtcctttg |
450 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
46997228 |
ttcatgaattcggcgtcggtgtgtagtcctttg |
46997196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 46974565 - 46974162
Alignment:
| Q |
18 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
117 |
Q |
| |
|
||||||||||||||| | | || ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||| |
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|
| T |
46974565 |
atattttgggaattcacttcatgcggtgagtgctgaaacgacggtaggggaattgctggagaatgatctaggatgggcagcatggaaaattcatctagct |
46974466 |
T |
|
| Q |
118 |
attgcaaactatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactg |
217 |
Q |
| |
|
||| ||| ||||||||||||||||||| | ||||||||||||||||| ||||| || ||||||||||||| ||| |||||||||||||||| |||| |
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|
| T |
46974465 |
gttgtaaatcatgatgataaagtggtgcgtaggtcggttgaagagtggtttcgttctccttttgtgtatcgaacagatttgttttttgatccttacactg |
46974366 |
T |
|
| Q |
218 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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|
| T |
46974365 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagttttggcagttagaagtggatatgctaataaatttgatgg |
46974266 |
T |
|
| Q |
318 |
aaaagtaacttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagag |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| |||||| ||||| ||||| |
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|
| T |
46974265 |
aaaagtaacttcatatccaggtcaagaaggaggaggaagcattgatcttgaagtgtgtctttcgccggagaaaatgatggcgctggaagcagatgaagag |
46974166 |
T |
|
| Q |
418 |
ttca |
421 |
Q |
| |
|
|||| |
|
|
| T |
46974165 |
ttca |
46974162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 46980554 - 46980144
Alignment:
| Q |
18 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
117 |
Q |
| |
|
||||||||||||||| | || | |||||| |||||||| |||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
46980554 |
atattttgggaattcactttatgtagtgagtgctgaaacgacggtaggagagttgctggagaatgatctaggatgggcagcatggaaaattcatgtggct |
46980455 |
T |
|
| Q |
118 |
attgcaaactatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactg |
217 |
Q |
| |
|
|||||||| | ||||||||||||||||| | ||||||||| ||||||| ||||| || ||| |||||||||||||| |||| |||||||||||||||| |
|
|
| T |
46980454 |
attgcaaatcacgatgataaagtggtgcgtaggtcggttgaaaagtggtttcgttctccttttttgtatcgaatggatttgttctttgatccttatactg |
46980355 |
T |
|
| Q |
218 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
||||||| || |||||||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46980354 |
tgatgataagtggttcaccgaggtttaatacgtatggaaatgaattcggaatgggaaaagctttggcagttagaagtggatatgctaacaaatttgatgg |
46980255 |
T |
|
| Q |
318 |
aaaagtaacttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagag |
417 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || ||||| |
|
|
| T |
46980254 |
aaaagtaatttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctaagaaaatgatggtgctggaaacaaatgaagag |
46980155 |
T |
|
| Q |
418 |
ttcatgaattc |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
46980154 |
ttcatgaattc |
46980144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 47001291 - 47000951
Alignment:
| Q |
18 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
117 |
Q |
| |
|
||||||||||||||| || ||||||| | ||||||||||| |||||||| ||| | |||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
47001291 |
atattttgggaattcgattcacgcagttggtgctgaaacaacagtaggggagttgttcaggaatgatttaggatgggcagcatggaagattcatctggct |
47001192 |
T |
|
| Q |
118 |
attgcaaactatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactg |
217 |
Q |
| |
|
||||| || |||||||||||||||||| ||| | |||||||||||| ||||||| || |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
47001191 |
attgcgaatcatgatgataaagtggtgcaaaattatgttgaagagtggatacgttctcctattgtgtatcgaatggatctgttctttgatccttatactg |
47001092 |
T |
|
| Q |
218 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47001091 |
tgatgatgggtagctcaccaaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagttgatatgctaacaaatttgatgg |
47000992 |
T |
|
| Q |
318 |
aaaagtaacttcatatccaggtcaagaaggaggagggagca |
358 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47000991 |
aaaagtaacttcatatccaggtcaaaaaggaggagggagca |
47000951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 428
Target Start/End: Complemental strand, 46995368 - 46994958
Alignment:
| Q |
18 |
atattttgggaattccatctacgcagtgagggctgaaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaagattcacctggct |
117 |
Q |
| |
|
||||||||||||||| | ||||||||||| |||||||||| ||| || |||||||| |||| ||||||| |||| ||||||||||||| || ||| |
|
|
| T |
46995368 |
atattttgggaattcagtttacgcagtgagcactgaaacaacaaaaggtgagttgctggagaatggactaggattggcatcatggaagattcatctagct |
46995269 |
T |
|
| Q |
118 |
attgcaaactatgatgataaagtggtgcgaaactcggttgaagagtggttacgttcgccctttgtgtatcgaatggatctgttttttgatccttatactg |
217 |
Q |
| |
|
|||||||| |||||| | | ||| |||||| | | || ||||||||||| || || || | ||| ||||||||| |||| |||||||||| ||| |
|
|
| T |
46995268 |
attgcaaaatatgatcacagagttgtgcgacaattagtggaagagtggttgcggtctcctatagtggttcgaatggacatgttggttgatccttactctg |
46995169 |
T |
|
| Q |
218 |
tgatgatgggtagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
46995168 |
tgatgatgggtagttcaccaaggtttaatatgtatgggagtgaatttggaatgggaaaagctttgggagttagaagtggatatgctaacaagtttgatgg |
46995069 |
T |
|
| Q |
318 |
aaaagtaacttcatatccaggtcaagaaggaggagggagcattgatcttgaagtgtgtctttcacctgagaaaatgatggttctggaaacagatcaagag |
417 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| | | || ||||| ||| ||||| |
|
|
| T |
46995068 |
aaaagtaacatcatatccaggtcaagaaggaggagggagcgttgatcttgaagtgtgtctttcgccggagaaaatgacgttgctagaaaccgatgaagag |
46994969 |
T |
|
| Q |
418 |
ttcatgaattc |
428 |
Q |
| |
|
||||||||||| |
|
|
| T |
46994968 |
ttcatgaattc |
46994958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 229 - 317
Target Start/End: Complemental strand, 46955243 - 46955155
Alignment:
| Q |
229 |
agttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatgg |
317 |
Q |
| |
|
|||||||| ||||| ||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||| |||||||||||||| |
|
|
| T |
46955243 |
agttcaccaaggttcaatatgtatggaaatgaatttggaatgggaaaagcggttgcagttctaagtggatatgcaaacaaatttgatgg |
46955155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 229 - 359
Target Start/End: Complemental strand, 46950915 - 46950785
Alignment:
| Q |
229 |
agttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaactt |
328 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| || || || |
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|
| T |
46950915 |
agttcaccaaggtttaatatgtatggaaatgaatttggaatgggaaaaccagtggcagttttgagtggttatgcaaacaaatgtgatgggaatgtgacag |
46950816 |
T |
|
| Q |
329 |
catatccaggtcaagaaggaggagggagcat |
359 |
Q |
| |
|
||||| || || ||||||||||||||||| |
|
|
| T |
46950815 |
catatgagggacatgaaggaggagggagcat |
46950785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 46958097 - 46957991
Alignment:
| Q |
228 |
tagttcaccgaggtttaatatgtatgggaatgaatttggaatgggaaaagcattggcagttagaagtggatatgctaacaaatttgatggaaaagtaact |
327 |
Q |
| |
|
|||||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||| || ||| | |
|
|
| T |
46958097 |
tagttcgccaaggttcaatatgtatgggaatgaatttggaatgggtaaagcgatggcagttctgagtggatatgcaaacaaatttgatggtaatgtatca |
46957998 |
T |
|
| Q |
328 |
tcatatc |
334 |
Q |
| |
|
||||||| |
|
|
| T |
46957997 |
tcatatc |
46957991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 46951091 - 46951039
Alignment:
| Q |
53 |
aaacaacggtaggggaattgctggaaaatgatctaggatgggcagcatggaag |
105 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| | |||||||||||||||||| |
|
|
| T |
46951091 |
aaacaaccgtaggtgaattgctagaaaatgatttgggatgggcagcatggaag |
46951039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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