View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_31 (Length: 458)
Name: NF1459_high_31
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_31 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 252 - 458
Target Start/End: Complemental strand, 47344656 - 47344450
Alignment:
| Q |
252 |
atgaagcatggcaaatacaagaagcaaggaataaagaaaatattagtgtcccactccctccgttccaaaataactgattcgtttgtaaaaataatttgtc |
351 |
Q |
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| T |
47344656 |
atgaagcatggcaaatacaagaagcaaggaataaagaaaatattagtgtcccactccctccgttccaaaataactgattcctttgtaaaaataatttgtc |
47344557 |
T |
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| Q |
352 |
caaaaatgaccaactatcttccattttcaatagttatatcatctaaataatactatttgcattacatttatgattatgatggatactctttacattaaaa |
451 |
Q |
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| T |
47344556 |
cgaaaatgaccaactatcttccattttcaatagttatatcatctaattaatactatttgcattacatttatgattatgatggaaactctttacattaaaa |
47344457 |
T |
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| Q |
452 |
gtatgat |
458 |
Q |
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||||||| |
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| T |
47344456 |
gtatgat |
47344450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 47344890 - 47344716
Alignment:
| Q |
18 |
ggtatatgccataacagctatagggttgttttttccaggccaccaacaaatagtagtgctcatgtttagcgcaagcatccctatcgtattctcctcacgc |
117 |
Q |
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| T |
47344890 |
ggtatatgccataacacctatagggttgttttttccaggcgaccaacaaatagtagtgctcatgtttagcgcaagcatccctatcgtattctcctcacgc |
47344791 |
T |
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| Q |
118 |
tattttttatcatgtttccgtctgttctgtataacccaaattttaattaatgaaatgccttgattttgcttgtat |
192 |
Q |
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| T |
47344790 |
tattttttatcatgtttccgtctgttctgtataacccaaattttaattaatgaaatgccttgattttgcttgtat |
47344716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 1495190 - 1495098
Alignment:
| Q |
92 |
gcatccctatcgtattctcctcacgctattttttatcatgtttccgtctgttctgtataacccaaattttaattaatgaaatgccttgattttgcttg |
189 |
Q |
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| T |
1495190 |
gcatccctatcgtattctcctcacactattttttattatgtttccgtctgt-----ataacccaaattttaattaatgaaatgccttgattttgcttg |
1495098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 312
Target Start/End: Original strand, 11827722 - 11827782
Alignment:
| Q |
252 |
atgaagcatggcaaatacaagaagcaaggaataaagaaaatattagtgtcccactccctcc |
312 |
Q |
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| T |
11827722 |
atgaagcaacgcaaatataagaagcaaggaataaagaaaatactagtgtactactccctcc |
11827782 |
T |
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