View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_40 (Length: 427)
Name: NF1459_high_40
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 390
Target Start/End: Original strand, 43412617 - 43412994
Alignment:
| Q |
14 |
atgaaataatattacatactgtgttcaatgccatgtttgagaatctttgttattaattctaattcaattttgacattctatgaaaacgtttgattcagct |
113 |
Q |
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| T |
43412617 |
atgaaataatattacatactgtgttcaatgccatgtttgagaatctttgttattaattctaattcaattttgacattctatgaaaacgtttgattcagct |
43412716 |
T |
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| Q |
114 |
cnnnnnnn-actatcaaaaaactcatcaatattgctgccccaactatatagtatactcccttagcatgtctcgaatgaatatactcttgccctaagtctc |
212 |
Q |
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| T |
43412717 |
cttttttttactatcaaaaaactcatcaatattgctgccccaactatatagtatactcccttagcatgtctcgaatgaatatactcttgccctaagtctc |
43412816 |
T |
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| Q |
213 |
tccttagcatggtttatcataggtttgccttgcctagtttagattcgctttcttaatggattcatgggtgcaatatatatagttggggttaaccatttta |
312 |
Q |
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| T |
43412817 |
ttcttagcatggtttatcataggtttgccttgcctagtttagattcgctttcttaatggattcatgggtgcaatatatatagttggggttaaccatttta |
43412916 |
T |
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| Q |
313 |
taatgatgtctttacactttattttaacttttnnnnnnntattacatcttctattttatcatgttcacgaaaataatc |
390 |
Q |
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||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
43412917 |
taatgatgtatttacactttattttaacttttaaaaaaatattacatcttctattttatcatgttcacgaaaataatc |
43412994 |
T |
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