View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_44 (Length: 412)
Name: NF1459_high_44
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_44 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 61 - 396
Target Start/End: Complemental strand, 33733951 - 33733612
Alignment:
| Q |
61 |
aattgtattataaatatcaaacatgttaaaatcaattctacacgttgaggattaattttgacccctctaaaaatggaatataacaaacatacactaaatc |
160 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33733951 |
aattgtattataaatatcaaacatgttaaaatcaattctacacattgaggattaattttgacccctctaaaaatgaaatataacaaacatacactaaatc |
33733852 |
T |
|
| Q |
161 |
tcttaactcacaagtctctattgtaaaaaagaaaatcgtctct---tgttaat-acaactattaattgaggagttgagttgcccaagtagtttaaactac |
256 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33733851 |
tcttaactcacaagtctttattgtacaaaagaaaatcgtctctctctctctctcacaactattaattgaggagttgagttgcccaactagtttaaacta- |
33733753 |
T |
|
| Q |
257 |
tatgtgataataagccacatgttttgagttcaaatctactagta---aaaatattagagaaatgctaacaagtgtctttaaggcacttgataagaaaatt |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||||||||| | |||||||||||||||| |
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| T |
33733752 |
--tgtgataataagccacatgttttgagttcaaatctactagtagtaaaaatattagaaaaatgctaacaaatgtctttaaagtacttgataagaaaatt |
33733655 |
T |
|
| Q |
354 |
aaaatagaaatttatattaaaatgtatgtattcggtacattag |
396 |
Q |
| |
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| T |
33733654 |
aaaatagaaatttatattaaaatttgtgtattcagtacattag |
33733612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 1884009 - 1883950
Alignment:
| Q |
305 |
tattagagaaatgctaacaagtgtctttaaggcacttgataagaaaattaaaatagaaat |
364 |
Q |
| |
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||||||| |||| |||||||||| ||||||| ||||||||| || | ||||||||||||| |
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| T |
1884009 |
tattagaaaaatactaacaagtgcctttaagacacttgatatgatatttaaaatagaaat |
1883950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 29935274 - 29935317
Alignment:
| Q |
89 |
aaatcaattctacacgttgaggattaattttgacccctctaaaa |
132 |
Q |
| |
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||||||||||||||| || || |||||||||||||||||||||| |
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| T |
29935274 |
aaatcaattctacacttttagaattaattttgacccctctaaaa |
29935317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 366
Target Start/End: Complemental strand, 41235969 - 41235915
Alignment:
| Q |
312 |
gaaatgctaacaagtgtctttaaggcacttgataagaaaattaaaatagaaattt |
366 |
Q |
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|||||||||||||||||| ||| |||||||||||| || ||||| ||||||||| |
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| T |
41235969 |
gaaatgctaacaagtgtcattagggcacttgataaaaagtttaaagtagaaattt |
41235915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 1147802 - 1147848
Alignment:
| Q |
312 |
gaaatgctaacaagtgtctttaaggcacttgataagaaaattaaaat |
358 |
Q |
| |
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|||||| ||||||||||| | ||||||||||||||||||| |||||| |
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|
| T |
1147802 |
gaaatgttaacaagtgtcatcaaggcacttgataagaaaactaaaat |
1147848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 356
Target Start/End: Complemental strand, 6420375 - 6420331
Alignment:
| Q |
312 |
gaaatgctaacaagtgtctttaaggcacttgataagaaaattaaa |
356 |
Q |
| |
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|||||||||||||||| | ||| |||||||||||||||| ||||| |
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| T |
6420375 |
gaaatgctaacaagtgcccttagggcacttgataagaaacttaaa |
6420331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 39366441 - 39366506
Alignment:
| Q |
310 |
gagaaatgctaacaagtgtctttaaggcacttgataagaaaattaaaatagaaatttatattaaaa |
375 |
Q |
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|||| ||| |||||| || ||||| | |||||||||||||| ||||| ||||||||||| |||||| |
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| T |
39366441 |
gagacatgataacaaatgcctttatgacacttgataagaaatttaaattagaaatttatcttaaaa |
39366506 |
T |
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