View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_46 (Length: 410)
Name: NF1459_high_46
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 45083036 - 45082646
Alignment:
| Q |
1 |
gaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagcaaaaggagattc |
100 |
Q |
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| T |
45083036 |
gaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagtaaaaggagattc |
45082937 |
T |
|
| Q |
101 |
tggtcaatataattttgcagcttcaaattcttcatctctccataacaactaccaatatcttgccatttggaaatactcttaacatcactattattgccca |
200 |
Q |
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| T |
45082936 |
tggtcaatataattttgcagcttcaaattcttcatctctccataacaactaccaatgtcttgccatttggaaatactcttaacatcactattattgccca |
45082837 |
T |
|
| Q |
201 |
ggcaagtaattaccnnnnnnnnnnnnnnnnnntcaatccatggaagaaaattactataaccctatctataaccatatattacagtgtaagttactatttg |
300 |
Q |
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| T |
45082836 |
ggcaagtaattaccaaaaaaataaaaataaaatcaatccatggaagaaaattactataaccctatctataaccatatattacagtgtaagttactatttg |
45082737 |
T |
|
| Q |
301 |
tgtttaaattttggtaattgattccacagataggtgataaatacaagttgaccgtggaggatctagtgaaaaaactaagagtagtggctac |
391 |
Q |
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| T |
45082736 |
tgtttaaattttggtaattgattccacagatgggtgataaatacaagttgaccgtggaggatctagtgaaaaaactaagagtagtggctac |
45082646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 45039569 - 45039767
Alignment:
| Q |
16 |
aatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagcaaaaggagattctggtcaatataattt |
115 |
Q |
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| T |
45039569 |
aatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtggaatgcaagaagggattgtggtcaatataatgt |
45039668 |
T |
|
| Q |
116 |
tgcagcttcaaattcttcatctctccataacaactaccaatatcttgccatttggaaatactcttaacatcactattattgcccaggcaagtaattacc |
214 |
Q |
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| T |
45039669 |
cccagcttcaacttcttcatctgtccataacaagtatcaatgtcttgccatttggaaatactcttgacatcaccattattgccaaggcaagtaattacc |
45039767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 266 - 391
Target Start/End: Original strand, 45040526 - 45040651
Alignment:
| Q |
266 |
ctataaccatatattacagtgtaagttactatttgtgtttaaattttggtaattgattccacagataggtgataaatacaagttgaccgtggaggatcta |
365 |
Q |
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| T |
45040526 |
ctataaccataccttactatgtaagtttctatttgtgtttaaatttttgtaattgattctacagatgggtgacaaatacaacttgacaataaaggaccta |
45040625 |
T |
|
| Q |
366 |
gtgaaaaaactaagagtagtggctac |
391 |
Q |
| |
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| T |
45040626 |
gtgaaaaaactaagagtagtggctac |
45040651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 6e-47; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 30 - 213
Target Start/End: Original strand, 29377336 - 29377519
Alignment:
| Q |
30 |
agagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgggaagcaaaaggagattctggtcaatataattttgcagcttcaaatt |
129 |
Q |
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|||| |||||| |||||||||||||| ||||||||||||||||||| ||||| | |||| ||| |||| ||||||||||||| | |||||||| || |
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| T |
29377336 |
agaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgcaagaggggattgtggtcaatataatgtcccagcttcagctt |
29377435 |
T |
|
| Q |
130 |
cttcatctctccataacaactaccaatatcttgccatttggaaatactcttaacatcactattattgcccaggcaagtaattac |
213 |
Q |
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| T |
29377436 |
cttcatctctccgtaacaactaccaatgtcttgccatttggaaatactcttgacatcgccattattgctcaggcaagtaattac |
29377519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 390
Target Start/End: Original strand, 29378112 - 29378252
Alignment:
| Q |
249 |
aattactataaccctatctataaccatatattacagtgtaagttactatttgtgtttaaattttggtaattgattccacagataggtgataaatacaagt |
348 |
Q |
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| T |
29378112 |
aattattataaccctatttgtaac-atatattataatgtatggttatatttgtgtttaaatttttgtaattgattctacagatgggtaataaatacaact |
29378210 |
T |
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| Q |
349 |
tgaccgtggaggatctagtgaaaaaactaagagtagtggcta |
390 |
Q |
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| T |
29378211 |
tgacagtgaaggatctagtgaaaaaactaagagaagtggcta |
29378252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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