View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_49 (Length: 405)
Name: NF1459_high_49
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_49 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 38368418 - 38368808
Alignment:
| Q |
1 |
ttaatataatgataataatcaatgatatattaatcatgagaaacaaattctaaaaggctatatgagttgcgataaaatttaccaataggtgagaacccaa |
100 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
38368418 |
ttaatataatgataataattaatgatatattaatcatgagaaacaaattctaaaaggctatatgagttgtgataaaatttaccaataggtgagaacccaa |
38368517 |
T |
|
| Q |
101 |
ataaccaattacgagagcatacgagagcttgcagattttctgaaaacatacaacttctatacttgttcaaaatacagttgccaggactaaaaggagattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368518 |
ataaccaattacgagagcatacgagagcttgcagattttctgaaaacatacaacttctatacttgttcaaaatacagttgccaggactaaaaggagattc |
38368617 |
T |
|
| Q |
201 |
tgatgccactgcgattaatgggacgctcaatacatccctagccaaccttgcaaggatataatactctttctcattgtctttccaatattgtaaagcattt |
300 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368618 |
tgatgccactgcgattaatgggatgctcaatacatccctagccaaccttgcaaggatataatactctttctcattgtctttccaatattgtaaagcattt |
38368717 |
T |
|
| Q |
301 |
acataataacctctgtctctctctttcaaataaagatcaagttgagtcacaccacctgcatatctttctagcctctctttttcaacatatt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38368718 |
acataataacctctgtctctctctttcaaataaagatcaagttgagtcacaccacctgcatatctttctagcctctctttttcaacatatt |
38368808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 38378329 - 38378716
Alignment:
| Q |
1 |
ttaatataatgataataatcaat-gatatattaatcatgagaaacaaattctaaaaggctatatgagttgcgataaaatttaccaataggtgagaaccca |
99 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||||||||||||| |
|
|
| T |
38378329 |
ttaatataatgataataatcaaaagatatagtaatcatgagaaacaaattctaaaaatctatacgaattgtgataaaatttaccaataggtgagaaccca |
38378428 |
T |
|
| Q |
100 |
aataaccaattacgagagcatacgagagcttgcagattttctgaaaacatacaacttctatacttgttcaaaatacagttgccaggactaaaaggagatt |
199 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||||| |||| |||||||||| ||||| |
|
|
| T |
38378429 |
gataaccaattatgagtacatacgagagcttgcagattttcagaaaccatacaacttctatacttattcaaaatacagctgccgggactaaaagcagatt |
38378528 |
T |
|
| Q |
200 |
ctgatgccactgcgattaatgggacgctcaatacatccctagccaaccttgcaaggatataatactctttctcattgtctttccaatattgtaaagcatt |
299 |
Q |
| |
|
| ||||| |||| |||||||||||||||||| ||||| ||||||| |||||||||||||| ||| | | ||| |||||||||||||||| || |
|
|
| T |
38378529 |
ccgatgctactgtgattaatgggacgctcaacacatctctagccatccttgcaaggatatcatatttacgacctatgtacttccaatattgtaaagggtt |
38378628 |
T |
|
| Q |
300 |
tacataata-acctctgtctctctctttcaaataaagatcaagttgagtcacaccacctgcatatctttctagcctctctttttcaacatat |
390 |
Q |
| |
|
| |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||| | |||||| |||||||| |||| |
|
|
| T |
38378629 |
tttataatatacatctg----tctctttcaaataaagatcaagttgagtcacaccacctgcatattttttttgcctctttttttcaagatat |
38378716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 38373147 - 38373533
Alignment:
| Q |
1 |
ttaatataatgataataatcaatgatatattaatcatgagaaacaaattctaaaaggctatatgagttgcgataaaatttaccaataggtgagaacccaa |
100 |
Q |
| |
|
||||||||| ||||||||||||||| | |||| |||||||||| ||||||||||| ||||| | |||| ||||| || |||| |||||| |||||||| |
|
|
| T |
38373147 |
ttaatataacgataataatcaatgagacattattcatgagaaataaattctaaaaaattatatcaattgcaataaa-ttcaccattaggtgtgaacccaa |
38373245 |
T |
|
| Q |
101 |
ataaccaattacgagagcatacgagagcttgcagattttctgaaaacatacaacttctatacttgttcaaaatacagttgccaggactaaaaggagattc |
200 |
Q |
| |
|
| ||||| ||| | ||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |
|
|
| T |
38373246 |
acaaccagttatgggagagtacgagagcttgcagattttccgaaaccatacaacttctatacttgttcaaaatactgctgccaggactaaaagcagattc |
38373345 |
T |
|
| Q |
201 |
tgatgccactgcgattaatgggacgctcaatacatccctagccaaccttgcaaggatataatactctttctcattgtctttccaatattgtaaagcattt |
300 |
Q |
| |
|
|||||| |||| ||||| ||| | ||| || ||||| ||||||| |||| |||| ||| ||| | | | ||| |||||||||| ||||| |||| |
|
|
| T |
38373346 |
tgatgcaactgtgattattggaatgctaaacacatctctagccatcctttcaagaataccatatttatgacctttgcacttccaatattctaaaggattt |
38373445 |
T |
|
| Q |
301 |
acataataacctctgtctctctctttcaaataaagatcaagttgagtcacaccacctgcatatctttctagcctctctttttcaacatatt |
391 |
Q |
| |
|
|||||| || ||| |||||| ||||||||||||||||||| |||||||| || |||| ||||| |||||| | |||||| ||||| |
|
|
| T |
38373446 |
ttataata---tccctctatctcttccaaataaagatcaagttgactcacaccatctacatacttttcttgcctctttatttcaagatatt |
38373533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University