View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_50 (Length: 403)
Name: NF1459_high_50
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_50 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 99 - 395
Target Start/End: Original strand, 21032595 - 21032890
Alignment:
| Q |
99 |
caaaattgaatcatttcattgcaactgattcaatatcaattctaaattgtgtataacatattaacctaagagtttaattgtcatatgcttaattttatgt |
198 |
Q |
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| T |
21032595 |
caaaattgattcatttcattgcaactgattcaatatcaattctaaattgtgtataacatattaacctaagagtttaattgtcatatgcttaattttatgt |
21032694 |
T |
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| Q |
199 |
tagtataaaactgttttacacgaacaatccatatgtactctaattcgttaaacatattatttatactcgcgatttcattgacttgtcac-gatgtttgaa |
297 |
Q |
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| T |
21032695 |
tagtataaaactgttttacacgaacaatcc--atgtactctaattcgttaaacataatatttatactcgcgatttcattgacttgtcacagatgtttgaa |
21032792 |
T |
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| Q |
298 |
ttgcaagaatatacaagaaaatctaaaaccaagttgtggactggatactgtccgatggagcttccggcaaactctccatctattacataattcttctc |
395 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21032793 |
ttgcaagaatatacaaaaaattctaaaaccaagttgtggactggatactgtccgatggagcttccggcaaactctccatctgttacataattcttctc |
21032890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 21032545 - 21032585
Alignment:
| Q |
18 |
actaatgaactgaaattataactctaattaaggtttgatta |
58 |
Q |
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| T |
21032545 |
actaataaactgaaattataactctaattaaggtttgatta |
21032585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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