View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_51 (Length: 403)
Name: NF1459_high_51
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_51 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 48471116 - 48470740
Alignment:
| Q |
11 |
cagagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatag |
110 |
Q |
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| T |
48471116 |
cagagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatag |
48471017 |
T |
|
| Q |
111 |
attcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactca |
210 |
Q |
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| T |
48471016 |
attcgcgtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactca |
48470917 |
T |
|
| Q |
211 |
ttgataaaccaatcttcttatacaaaatctttcattgattcctccatcagaacagcaagacaatttgactttcaaggcatagacttatgtggtgcagtgc |
310 |
Q |
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| T |
48470916 |
ttgataaaccaatcttcttatagaaaatctttcattggttcctccatcagaacagcaagacaatttgactttcaaggcatagacttttgtggtgcagtgc |
48470817 |
T |
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| Q |
311 |
caaaacagggcaaagatcttgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaagt |
387 |
Q |
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| T |
48470816 |
caaaacagggcaaagatcttgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaagt |
48470740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 13 - 386
Target Start/End: Complemental strand, 48479476 - 48479103
Alignment:
| Q |
13 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagat |
112 |
Q |
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| T |
48479476 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattctaaat |
48479377 |
T |
|
| Q |
113 |
tcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcatt |
212 |
Q |
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|||| |||||||||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48479376 |
tcgactccttcaccaccagagtaaagcttcaaaatccttctgttacatctcttctatcaatctacactggaggagaaaattcttcactttttaactcgtt |
48479277 |
T |
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| Q |
213 |
gataaaccaatcttcttatacaaaatctttcattgattcctccatcagaacagcaagacaatttgactttcaaggcatagacttatgtggtgcagtgcca |
312 |
Q |
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| T |
48479276 |
gataaaccaatcttcttatagaaaatctttcattgattcctccatcagaacggcaagacgatttgactttcaaggcatagacttttgtggtgcagggcca |
48479177 |
T |
|
| Q |
313 |
aaacagggcaaagatcttgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaag |
386 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
48479176 |
aaacagggcaaagatcttgttaatttcgcaacccttttgaaagagtggcgaattgcaataacttctgaggcaag |
48479103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 48882868 - 48883242
Alignment:
| Q |
13 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagat |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || || |
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| T |
48882868 |
gagataaaatcaacacttttcacacacctcttatgtgcttttgctttcataaattccacagactacatcatctttacaaatgactctgagtattctaaat |
48882967 |
T |
|
| Q |
113 |
tcgagtccttcaccagaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcatt |
212 |
Q |
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|||| |||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
48882968 |
tcgactccttcaccaccagagtaaagcttcaaaatccttctgttacatctcttttatcaatctacactggaggacaaaattcttcactttttaactcatt |
48883067 |
T |
|
| Q |
213 |
gataaaccaatcttcttatacaaaatctttcattgattcctccatcagaacagcaagacaatttgactttcaaggcatagacttatgtggtgcagtgcca |
312 |
Q |
| |
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| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||| || | |
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| T |
48883068 |
gttaaaccaatcttcttatagaaaatctttcattgattcctccatcagaacggcaagacgatttgactttcaaggcatagacttttgtggtgcagggcta |
48883167 |
T |
|
| Q |
313 |
aaacagggcaaagatcttgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaagt |
387 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48883168 |
aaacagggcaaagttcttgtcaatttcacaacccttttgaaagagtggcgagttgcgataacttctgaggcaagt |
48883242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 28 - 386
Target Start/End: Complemental strand, 48487930 - 48487572
Alignment:
| Q |
28 |
cttttcacacacctcttatgtgcttttgctttcataaattccacagactacagcatctttataaatgactctgagtattatagattcgagtccttcacca |
127 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| |||||| |||||| |||||||| || ||||| | | | |||| |||| |||| |
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| T |
48487930 |
cttttcacacaccttttatgtgcttttgcttttataaactccacaaactacaatatctttattaactcatctgaagaacacaaattctccacctttacca |
48487831 |
T |
|
| Q |
128 |
gaagagtaaagcttcaaaacccatctgttacatctcttttatcaatctacactggaggagaaaattcttcactttttaactcattgataaaccaatcttc |
227 |
Q |
| |
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| ||||||||||||||| |||||||||||| ||||| | ||||||||||| | |||||| |||||| ||||| |||| |||||||||||||||| |
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| T |
48487830 |
atacagtaaagcttcaaaatccatctgttacaactcttctttcaatctacaccaaaacagaaaactcttcagttttttcctcactgataaaccaatcttc |
48487731 |
T |
|
| Q |
228 |
ttatacaaaatctttcattgattcctccatcagaacagcaagacaatttgactttcaaggcatagacttatgtggtgcagtgccaaaacagggcaaagat |
327 |
Q |
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| | | ||||||||||||||||| ||||||| |||||||||| | | || ||||||||||||||||| |||| | |||||| || ||||| || |
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| T |
48487730 |
taacaggaaatctttcattgattcttccatcaaaacagcaagaaactatgggtttcaaggcatagactttcgtggagttaagccaaagcaaggcaatgaa |
48487631 |
T |
|
| Q |
328 |
cttgtcaatttcgcaacccttttgaaagagtggcgagttgcgataacttctgaggcaag |
386 |
Q |
| |
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|||| ||||| |||||||||||||| || | |||| | |||||||||||||| ||||| |
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| T |
48487630 |
cttgcaaatttggcaacccttttgaaggaattgcgaatagcgataacttctgaagcaag |
48487572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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