View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_55 (Length: 397)
Name: NF1459_high_55
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_55 |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 50754967 - 50755333
Alignment:
| Q |
17 |
tatatccaatgatgatccacattctaacttcaggtatgtcatgaaaactacctcattactagtactatattagatttttctatttgtcattatcctttta |
116 |
Q |
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| T |
50754967 |
tatatccaatgatgatccacattctaacttcaggtatgtcatgaaaactacctcattactagtaccatattagatttttctatttgtcattatcctttta |
50755066 |
T |
|
| Q |
117 |
acatttagttagtggaagtagttgatttctccttatatgcaataacattttgaannnnnnnngtctcacttcattcaaattgaattaatattttttatta |
216 |
Q |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
50755067 |
acatttagtaagtggaagtagtagatttctccttatatgcaataacattttgaattttttttgtctcacttcattcaaattgaattaataatttttatta |
50755166 |
T |
|
| Q |
217 |
aagtatctaattatatatttaaccatctttctcttgtgatgattaaggaacgatgtgaataa-tcaattaggtaaaatggtggataatatataagtctag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50755167 |
aagtatctaattatatatttaaccatctttctcttgtgatgattaaggaacgatgtgaataaatcaattaggtaaaatggtggataatatataagtctag |
50755266 |
T |
|
| Q |
316 |
atcacattcaattttgtagtcattcttaattagtttttatgttaagtttaattataagggtaatttt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50755267 |
atcacattcaattttgtagtcattcttaattagtttttatgttaagtttaattataagggtaatttt |
50755333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 4321233 - 4320879
Alignment:
| Q |
17 |
tatatccaatgatgatccacattctaacttcaggtatgtcatgaaaactacctcattactagtactatattagatttttctatttgtcattatcctttta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4321233 |
tatatccaatgatgatccacattctaacttcaggaatgtcatgaaaactacctcattactagtactatattagatttttctatttgtcattatcctttta |
4321134 |
T |
|
| Q |
117 |
acatttagttagtggaagtagttgatttctccttatatgcaataacattttgaa-nnnnnnnngtctcacttcattcaaattgaattaatattttttatt |
215 |
Q |
| |
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||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4321133 |
acatttagtaagtggaagtagtagatttctccttatatgcaataacattttgaatttttttttgtctcacttcattcaaattgaattaatattttttatt |
4321034 |
T |
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| Q |
216 |
aaagtatctaattatatatttaaccatctttctcttgtgatgattaaggaacgatgtgaataatcaattaggtaaaatggtggataatatataagtctag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4321033 |
aaagtatctaattatatatttaaccatctttctcttgtgatgattaaggaacgatgtgaataatcaatta------------gataatatataagtctag |
4320946 |
T |
|
| Q |
316 |
atcacattcaattttgtagtcattcttaattagtttttatgttaagtttaattataagggtaatttt |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4320945 |
atcacattcaattttgtagtcattcttaattagtttttatgttaagtttaattataagggtaatttt |
4320879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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