View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_59 (Length: 377)
Name: NF1459_high_59
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 89 - 374
Target Start/End: Complemental strand, 47711997 - 47711712
Alignment:
| Q |
89 |
acagggtctggcaatttctatttgaagaatctacatattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacgggcatc |
188 |
Q |
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| T |
47711997 |
acagggtctggcaatttctatttgaagaatctacatattcaaatgcatcattatcagatgagaaagatgaaactcttgatgatagaatatcacaggcatc |
47711898 |
T |
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| Q |
189 |
aaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaata |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47711897 |
aaaaaagacattgtcatcttcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcacttgcacttccttctgaattaaaaata |
47711798 |
T |
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| Q |
289 |
gaaatagagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggggtccatgtcat |
374 |
Q |
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| T |
47711797 |
gaaatatagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggtgtccatttcat |
47711712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 47712063 - 47712018
Alignment:
| Q |
17 |
agatctttccctatattttccttgatcatccaccaaagactaacac |
62 |
Q |
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| T |
47712063 |
agatctttccctatattttccttgatcattgaccaaagactaacac |
47712018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 163 - 292
Target Start/End: Complemental strand, 32885582 - 32885453
Alignment:
| Q |
163 |
cttgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcac |
262 |
Q |
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| T |
32885582 |
cttgatgatagaatatcacgggtatcaaaaaagacattgtcatcgtcatctgtttcttcctctgccacatcatttctctcattatcatcctcagattcac |
32885483 |
T |
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| Q |
263 |
ttgcacttccttctgaattaaaaatagaaa |
292 |
Q |
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| T |
32885482 |
ttgcacttccttctgaattaaaaatagaaa |
32885453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 32885650 - 32885611
Alignment:
| Q |
125 |
attcaaatgcatcattatcagatgagaaagatgaaactct |
164 |
Q |
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| T |
32885650 |
attcaaatgcatcattatcagatgagaaagatgatactct |
32885611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 62
Target Start/End: Complemental strand, 32885795 - 32885750
Alignment:
| Q |
17 |
agatctttccctatattttccttgatcatccaccaaagactaacac |
62 |
Q |
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| T |
32885795 |
agatctttccctatattatccttgatcattgaccaaagactgacac |
32885750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 45603803 - 45603720
Alignment:
| Q |
291 |
aatagagtcatctctgataactaagccagcccctagaagagcaatagaagtaatgaccatgatcaaaattggggtccatgtcat |
374 |
Q |
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| T |
45603803 |
aatatagtcatctgtgaggactaaaccagcccctagaagagcaatagatgtaatgaccatgatcaaaattggtgtccatttcat |
45603720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 24481296 - 24481169
Alignment:
| Q |
165 |
tgatgatagaatatcacgggcatcaaaaaagacattgtcatcttcatctgtttcttcctctgcccaatcatttctctcattatcatcctcagattcactt |
264 |
Q |
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|||||||| || |||||||| ||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
24481296 |
tgatgatataaaatcacgggtgtcaaaaaagggggtatcatcatcatctgtttcttcctctgctgcatcatttctctcattatcatcctcagacccactt |
24481197 |
T |
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| Q |
265 |
gcacttccttctgaattaaaaatagaaa |
292 |
Q |
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||||| | |||| ||||||||| |||| |
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| T |
24481196 |
gcactaacctctggattaaaaattgaaa |
24481169 |
T |
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