View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_63 (Length: 369)
Name: NF1459_high_63
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 28862180 - 28862029
Alignment:
| Q |
1 |
ttaaataatcaccatgcatcttaaacctgttcttgtgaaatgctaaattctatatttggtaacagttaaaagaccatgaaatttttgcatgtgatttcaa |
100 |
Q |
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| T |
28862180 |
ttaaataatcaacatgaatcttaaacctgttcttgtgaaattctaaattctatatttggtaacagttaaaagaccatgaaatttttgcatgtgatttcaa |
28862081 |
T |
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| Q |
101 |
acatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
152 |
Q |
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| T |
28862080 |
acatacatcatttcatggattccttaaagcagatatacatttagaaactctt |
28862029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 221 - 352
Target Start/End: Complemental strand, 28862006 - 28861875
Alignment:
| Q |
221 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttcttgtaatcagagattcaaagatgtatatctcataatgacaccaacaa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28862006 |
acgatcaaaattcaagaattcattcaagaacgtacactcacatgcatgctttcatgtaatcagagattcaaagatgtatatctcataatgacaccaacaa |
28861907 |
T |
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| Q |
321 |
tgcaaagaaattcagaaagatgaagataattt |
352 |
Q |
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| T |
28861906 |
tgcaaagaaattcagaaagatgaagataattt |
28861875 |
T |
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