View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_7 (Length: 617)
Name: NF1459_high_7
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 39107862 - 39108461
Alignment:
| Q |
1 |
tcaactataaatattaaatcactctttgcttttcaaatttatgattaatctatttattttataaactagaaaattgagttcacgaaatttaacccagttt |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||| |
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| T |
39107862 |
tcaactataaatattaaatcactcattgcttttcaaatttatgattaatctatttattttatagactagaaaatcgagttcacgaaatttaacccaattt |
39107961 |
T |
|
| Q |
101 |
tactttgaattatttgtatacacgaaccatgtatttgttttttgagtagtgttagcaaaactctcacaaacactcacnnnnnnnattgacttaaattaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| | |
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| T |
39107962 |
tactttgaattatttgtatacacgaaccatgtatttgtttttttagtagtgttagcaaaactctcgcaaacactcactttttt-attgacttaaattata |
39108060 |
T |
|
| Q |
201 |
gttggtatcacactttagaaatgagttccattcaaaatgatgggttatacatggtttcatcctatagaagaatacgtgttgaagggaacgttgaaaagag |
300 |
Q |
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|| | ||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
39108061 |
gtggatattacactttagaaatgagttctattcaaaatggtgggttatacatggtttcatcctatagaagaatacgcgttgaagggaacgttgaaaaaag |
39108160 |
T |
|
| Q |
301 |
agtgtctcaggattccttttgttttttacacacatattcaatcaaatcacattataatgttattat-ttagtttaattcttaaaataactctacaaatat |
399 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39108161 |
agtgtcccaggattccttttgttttttacacgcatattcaatcaaatcacattataatgttattatgttagtttaattcttaaaataactctacaaatat |
39108260 |
T |
|
| Q |
400 |
ctagttattattttacaaaaatatttacttaatatgatttaattgaatgcatgaat-nnnnnnnnttaaaccgtcatttgacaccagagcttttatggtg |
498 |
Q |
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| T |
39108261 |
ctagttattattttacaaaaatatttacttaatataatttaattgaatgcatgaataaaaaaaaattaaaccgtcatttgacaccggagcttttatggtg |
39108360 |
T |
|
| Q |
499 |
ggacatgcaaccctcaaagtcgcctcaagaaagtggccaaagatgatgttgacagaaacataaagttcaaagggtcattcataacaatattatgtctcat |
598 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
39108361 |
ggacctgcaaccctcaaagtcgcctcaaaaaagtggccaaagatgatgttgacagaaacataaagttcaaagagtcattcataataatattatgtctcat |
39108460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 304
Target Start/End: Complemental strand, 25010124 - 25010005
Alignment:
| Q |
185 |
attgacttaaattaaagttggtatcacactttagaaatgagttccattcaaaatgatgggttatac-atggtttcatcctatagaagaatacgtgttgaa |
283 |
Q |
| |
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|||| ||||||||| ||| ||| |||||||||||||||| |||||||||||||| | ||| |||| |||||||||||| ||| ||||| |||||||| |
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| T |
25010124 |
attggcttaaattatagt-ggtctcacactttagaaatgggttccattcaaaatagtaggtaatacaatggtttcatccaataagagaatgagtgttgaa |
25010026 |
T |
|
| Q |
284 |
gggaacgttgaaaagagagtg |
304 |
Q |
| |
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|| | ||||||||||||||| |
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| T |
25010025 |
ggaagtgttgaaaagagagtg |
25010005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 538
Target Start/End: Original strand, 7760804 - 7760855
Alignment:
| Q |
488 |
cttttatggtgggacatgcaaccctcaaagtcgcctcaag-aaagtggccaa |
538 |
Q |
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| T |
7760804 |
cttttatggtgggacaagcaaccctcaaagtcgcgtcaagtaaagtggccaa |
7760855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 556 - 595
Target Start/End: Original strand, 44684961 - 44685000
Alignment:
| Q |
556 |
acataaagttcaaagggtcattcataacaatattatgtct |
595 |
Q |
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| T |
44684961 |
acatagagttcaaagggtcatgcataacaatattatgtct |
44685000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 308
Target Start/End: Original strand, 18949266 - 18949367
Alignment:
| Q |
208 |
tcacactttagaaatgagttccattcaaaatgatgggttatacat-ggtttcatcctatagaagaatacgtgttgaagggaacgttgaaaagagagtgtc |
306 |
Q |
| |
|
|||||||||| ||||| |||||| | ||| |||||| | |||||| ||||| |||| ||| || |||| | |||||| ||| ||||||||||||||||| |
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| T |
18949266 |
tcacactttaaaaatgggttccacttaaagtgatggatcatacattggttttatccaataaaaaaataattattgaagagaatgttgaaaagagagtgtc |
18949365 |
T |
|
| Q |
307 |
tc |
308 |
Q |
| |
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|| |
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|
| T |
18949366 |
tc |
18949367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Complemental strand, 20954788 - 20954744
Alignment:
| Q |
208 |
tcacactttagaaatgagttccattcaaaatgatgggttatacat |
252 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
20954788 |
tcacactttagaaatgagttccattcaaagtagtgggttatacat |
20954744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 489 - 518
Target Start/End: Complemental strand, 23773440 - 23773411
Alignment:
| Q |
489 |
ttttatggtgggacatgcaaccctcaaagt |
518 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23773440 |
ttttatggtgggacatgcaaccctcaaagt |
23773411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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