View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_8 (Length: 581)
Name: NF1459_high_8
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 572
Target Start/End: Original strand, 1701372 - 1701925
Alignment:
| Q |
19 |
acatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaag |
118 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1701372 |
acatgttggctctattaccctccctacccccaatactactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaag |
1701471 |
T |
|
| Q |
119 |
aaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1701472 |
aaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtaaaggatcaggtcacgggggcgacgttgatgcgcggttcaagta |
1701571 |
T |
|
| Q |
219 |
acagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgg |
318 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
1701572 |
acagtgatctctacacctttcatcctaagtctcaatatcaacccactgctcttgcttccacctgctccgcctccccttctttatggcatgctcgtttcgg |
1701671 |
T |
|
| Q |
319 |
gcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaat |
418 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| ||||||||| |
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| T |
1701672 |
tcatccctctttcagagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaat |
1701771 |
T |
|
| Q |
419 |
aaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcag |
518 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1701772 |
aaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcacttcag |
1701871 |
T |
|
| Q |
519 |
ttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattctt |
572 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1701872 |
ttcatggttacaaatattatcttgtgtttgttgatcattttactcgatattctt |
1701925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 508
Target Start/End: Original strand, 180945 - 181434
Alignment:
| Q |
19 |
acatgttggctctattaccctccctacccccaatattactttcaaattaaataaggtgctttgtgtcccaaatgctaaacataatctcatatctgttaag |
118 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
180945 |
acatgttggctctattaccctccctaccccaaatattactttcaaattaaataatgtgctttgtgtcccaaatgctaaacataatctcatatatgttaag |
181044 |
T |
|
| Q |
119 |
aaattctgcaagtctaacaatacatatcttgaatttcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttcaagta |
218 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
181045 |
aaattctgcaagtctaacaatacatatcttgaattgcaccctacctttttctgtgtgaaggatcaggtcacgggggtgacgttgatgcgcggttccagta |
181144 |
T |
|
| Q |
219 |
acagtgatctctacacctttcattatatgtctcaatatcaacccactactcttgcttccacctgctctgcctccccttctatatggcatgctcgtttcgg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
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| T |
181145 |
acagtgatctctacacctttcattatatgtctcaatatcaacccactgctcttgcttccacttgctctgcctcaccttctatatggcatgctcgtttcgg |
181244 |
T |
|
| Q |
319 |
gcatccctctttcagagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaat |
418 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
181245 |
gcatccctctttcagagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaat |
181344 |
T |
|
| Q |
419 |
aaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181345 |
aaaagtcataagcttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 5400484 - 5400652
Alignment:
| Q |
395 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
494 |
Q |
| |
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||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
|
| Q |
495 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
563 |
Q |
| |
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||||||| || ||||| || || |||||||||||| ||||||||||| |||||||| ||||| |||| |
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|
| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactc |
5400652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 395 - 563
Target Start/End: Original strand, 3541459 - 3541627
Alignment:
| Q |
395 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
494 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
|
| Q |
495 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactc |
563 |
Q |
| |
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||||||| || ||||| || || | ||||||||||| ||||||||||| |||||||| ||||| |||| |
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| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactc |
3541627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 466 - 562
Target Start/End: Original strand, 31098805 - 31098901
Alignment:
| Q |
466 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
562 |
Q |
| |
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|||||||||||| | ||||||||||||||| |||| ||||| || | | | | ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttact |
31098901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 26592600 - 26592523
Alignment:
| Q |
485 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttact |
562 |
Q |
| |
|
||||||||||||||||| || ||||| || || |||||||||| | ||| ||||||||||||||||| || |||||| |
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|
| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttact |
26592523 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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