View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_84 (Length: 306)
Name: NF1459_high_84
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_84 |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 13 - 290
Target Start/End: Complemental strand, 14412542 - 14412268
Alignment:
| Q |
13 |
aatattatgaaattaattatgctttttaactcaaatgccaaaatatagagaaaatgatggaccaacatgattactaaaagtaacttcaaattcaaaacca |
112 |
Q |
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| T |
14412542 |
aatattatgaaattaattatgctttttaactcaaatgccaaaatatagagaaaatgatggaccaacatgattactaaaagtaacttcaaattcaaaacca |
14412443 |
T |
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| Q |
113 |
tgagcatgaacatgacatataaaagctcacaaatannnnnnnacctaatgcagctacacttggcagttgtcacttatgattttaaatcttctttcctttc |
212 |
Q |
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| T |
14412442 |
tgagcatgaacatgacatataaaagctcacaaatatttt---acctaatgcagctacacttggcagttgtcacttatgattttaaatcttctttcctttc |
14412346 |
T |
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| Q |
213 |
atgttctttgttgagcatatataagaaattacattcaaatatgaaaagccataaatcacagtaaattagtaccctttg |
290 |
Q |
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| T |
14412345 |
atgttctttgttgagcatatataagaaattacattcaaatatgaaaagccataaatcacagtaaattagtaccctttg |
14412268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 104 - 283
Target Start/End: Original strand, 14368726 - 14368903
Alignment:
| Q |
104 |
tcaaaaccatgagcatgaacatgacatataaaagctcacaaatannnnnnnacctaatgcagctac----acttggcagttgtcacttatgattttaaat |
199 |
Q |
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| T |
14368726 |
tcaaaaccatcaacatgaaaatgatatataaaagctcacaaataatttta---ctaatgcagctacgtacactttccagttggcacttctgattttaaat |
14368822 |
T |
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| Q |
200 |
cttctttcctttcatgttctttgtt-gagcatatataagaaattacattcaaatatgaaaagccataaatcacagtaaattagta |
283 |
Q |
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| T |
14368823 |
cttgtttcctttcatgttctttgttaaagc----ataataaactacattcaaatatgaaaagtcataaatcacaataaactagta |
14368903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 35175818 - 35175859
Alignment:
| Q |
189 |
tgattttaaatcttctttcctttcatgttctttgttgagcat |
230 |
Q |
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||||||| | ||||||| |||||||||||||||||||||||| |
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| T |
35175818 |
tgattttgagtcttcttccctttcatgttctttgttgagcat |
35175859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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