View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_85 (Length: 303)
Name: NF1459_high_85
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_85 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 2046681 - 2046390
Alignment:
| Q |
1 |
ataatttctataaatttgaaaattgtataattgaatgtaattaatcagacactgaagacaccttgaatctgaagtgtcgacggtgctaaaattagaataa |
100 |
Q |
| |
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| T |
2046681 |
ataatttctataaatttgaaaattgtataattgaatgtaattaatcagacactgaagacaccttcaatctgaagtgtcgacggtgctaaaattagaataa |
2046582 |
T |
|
| Q |
101 |
ccaaagttcaaggagcacataannnnnnnnatacacatgcatacaaacgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggt |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046581 |
ccaaagttcaaggagcacataattttttttatacacatgcatacaaatgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggt |
2046482 |
T |
|
| Q |
201 |
ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
292 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046481 |
ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
2046390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 22 - 292
Target Start/End: Complemental strand, 2037286 - 2037013
Alignment:
| Q |
22 |
attgtataattgaatgtaattaatcagacactgaagacaccttgaatctgaagtgtcgacggtgctaaaa-----tta--gaataaccaaagttcaagga |
114 |
Q |
| |
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|||||| ||||||||| || |||||| |||| ||||||||||| ||||||| |||| | |||||||| || ||| |||||||||||||||||||| |
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| T |
2037286 |
attgtacaattgaatgcaactaatcacacaccgaagacacctttaatctgatgtgt-gtcggtgctacaaacagattacagaataaccaaagttcaagga |
2037188 |
T |
|
| Q |
115 |
gcacataannnnnnnnatacacatgcatacaaacgtactagtacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaaca |
214 |
Q |
| |
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|||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2037187 |
gcacataaatttc---atacacatgcatacagatgtacaagtacctgcataccacaggaatctcttctggtttaagagtatcaggtggagccaagtaaca |
2037091 |
T |
|
| Q |
215 |
agcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2037090 |
agcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaataaaagatctattcat |
2037013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 156 - 286
Target Start/End: Complemental strand, 2054341 - 2054211
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
255 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||||| | |||||||| |
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|
| T |
2054341 |
tacctgcataccacaggaaactcttctggtttgagagtatcaggtggagccaagttacaaccaaaactatccttccaattgagtgctggagagctataaa |
2054242 |
T |
|
| Q |
256 |
tatcataattgctattgtaaataaaagatct |
286 |
Q |
| |
|
||||| |||||||||||||||||| ||||| |
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|
| T |
2054241 |
tatcaacattgctattgtaaataaaggatct |
2054211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 156 - 289
Target Start/End: Complemental strand, 2033094 - 2032961
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
255 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||| |||||||| |
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| T |
2033094 |
tacctgcataccacaggaaactcttgtggtttgagagtatcaggtggagccaagtaacacataaaactatccctccaattgagtgctggtgagctataaa |
2032995 |
T |
|
| Q |
256 |
tatcataattgctattgtaaataaaagatctatt |
289 |
Q |
| |
|
||||| |||| ||||| |||| ||| |||||||| |
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| T |
2032994 |
tatcaaaattactattataaacaaaggatctatt |
2032961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 156 - 280
Target Start/End: Complemental strand, 10767730 - 10767609
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
255 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| |||||||||| |||||||||||| | ||||||||| |||||||| |||||||||| |||||||| |
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|
| T |
10767730 |
tacctgcatactacaggaatatcttctggtttgggagtatcagg---agccaagtaacatgtaaaagtatccctccaattaagtgctggtgagctataaa |
10767634 |
T |
|
| Q |
256 |
tatcataattgctattgtaaataaa |
280 |
Q |
| |
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||||| | || |||||||||||||| |
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| T |
10767633 |
tatcaaagttactattgtaaataaa |
10767609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 289
Target Start/End: Original strand, 1950438 - 1950568
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
255 |
Q |
| |
|
||||||||||| ||||||| |||| ||||||| |||||||||| |||||||||||||||| ||||||| ||||||||||||||||||| |||||| | |
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| T |
1950438 |
tacctgcatacaacaggaaaatcttgtggtttgggagtatcagg---agccaagtaacaagcacaagtatccctccaattgagtgctggtgagctataca |
1950534 |
T |
|
| Q |
256 |
tatcataattgctattgtaaataaaagatctatt |
289 |
Q |
| |
|
|||| ||||||| ||||||||||| ||| |||| |
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|
| T |
1950535 |
aatcaaaattgcttttgtaaataaatgatttatt |
1950568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 285
Target Start/End: Complemental strand, 2028555 - 2028429
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaa |
255 |
Q |
| |
|
||||||||||| ||||||| |||||||||||| |||||||||| ||||||| |||||| | ||||||| ||||||||||||||||||| |||||| | |
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|
| T |
2028555 |
tacctgcatacaacaggaaaatcttctggtttgggagtatcagg---agccaaggaacaagtacaagtatccctccaattgagtgctggtgagctataca |
2028459 |
T |
|
| Q |
256 |
tatcataattgctattgtaaataaaagatc |
285 |
Q |
| |
|
|||| ||||||| ||||||||||| |||| |
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|
| T |
2028458 |
aatcaaaattgcttttgtaaataaatgatc |
2028429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 292
Target Start/End: Complemental strand, 2050311 - 2050199
Alignment:
| Q |
177 |
tcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa |
276 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||| |||||| |||| |||||||||||||| || | ||||||||||||| |||| ||||| |||| |
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|
| T |
2050311 |
tcttctggtttgggagtatcagg---agccaagtaacacgcaaaactatccctccaattgagtgccggagagctataaatatcaaaattactattataaa |
2050215 |
T |
|
| Q |
277 |
taaaagatctattcat |
292 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
2050214 |
caaaggatctattcat |
2050199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 2057274 - 2057164
Alignment:
| Q |
177 |
tcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgtaaa |
276 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||| |||| |||| |||||||||||||| || | ||||||||||||| |||||||||||||| |
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|
| T |
2057274 |
tcttctggttttggagtatcagg---agccaagtaacaactaaaactatccctccaattgagtgccggagagctataaatatcaacattgctattgtaaa |
2057178 |
T |
|
| Q |
277 |
taaaagatctattc |
290 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
2057177 |
caaaggatctattc |
2057164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 48908699 - 48908786
Alignment:
| Q |
156 |
tacctgcataccacaggaatctcttctggtttgagagtatcaggtggagccaagtaacaagcaaaagtatctctccaattgagtgctggtg |
246 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| |||||||||| ||||||| ||||| ||||||||| ||||||||||| ||||||| |
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|
| T |
48908699 |
tacctgcatactagaggaaaatcttctggtttgggagtatcagg---agccaagaaacaaataaaagtatccctccaattgagcgctggtg |
48908786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 274
Target Start/End: Original strand, 28786155 - 28786228
Alignment:
| Q |
201 |
ggagccaagtaacaagcaaaagtatctctccaattgagtgctggtgggctataaatatcataattgctattgta |
274 |
Q |
| |
|
||||||||| |||| |||||||||| |||||||||||||||| || ||||||| || | ||||||||||||| |
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|
| T |
28786155 |
ggagccaaggaacacacaaaagtatccctccaattgagtgctgatgaactataaagattaaaattgctattgta |
28786228 |
T |
|
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