View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_high_86 (Length: 303)

Name: NF1459_high_86
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_high_86
NF1459_high_86
[»] chr6 (6 HSPs)
chr6 (137-284)||(31611372-31611519)
chr6 (146-284)||(5746648-5746786)
chr6 (1-70)||(31611232-31611301)
chr6 (150-284)||(34092848-34092983)
chr6 (153-244)||(21029685-21029776)
chr6 (151-244)||(32316422-32316515)
[»] scaffold0127 (1 HSPs)
scaffold0127 (146-284)||(21476-21614)
[»] chr3 (2 HSPs)
chr3 (153-284)||(36602190-36602322)
chr3 (151-284)||(4637307-4637439)
[»] chr7 (3 HSPs)
chr7 (146-284)||(1819896-1820034)
chr7 (146-267)||(43344789-43344912)
chr7 (155-244)||(2613799-2613890)
[»] scaffold0620 (1 HSPs)
scaffold0620 (150-284)||(8182-8317)
[»] chr5 (1 HSPs)
chr5 (208-284)||(8987836-8987912)
[»] chr4 (1 HSPs)
chr4 (210-280)||(33283874-33283944)
[»] chr1 (1 HSPs)
chr1 (146-244)||(22200057-22200157)
[»] chr2 (1 HSPs)
chr2 (146-174)||(15817397-15817425)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 137 - 284
Target Start/End: Original strand, 31611372 - 31611519
Alignment:
Q  137 gagaggtaggtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagt 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  31611372 gagaggtaggtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcagcggaccgagggtagagaggtagtgaaagccgaaggagt 31611471  T
Q  237 gttggaattggactttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||||    
T  31611472 gttggaattgaactttttgggtgtggcttaaccatggggaggtgaaga 31611519  T

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Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 5746648 - 5746786
Alignment:
Q  146 gtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaatt 245  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||| ||| |   ||||||||||| ||||||| |||||||||||||||||     
T  5746648 gtcaattctttgattcaagtttgctttggcctattatggtgttttttcttcggtggatcaggggtagagaggtggtggaaggcgaaggagtgttggaata 5746747  T
Q  246 ggactttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    | | |||||||||||||||||||||||| ||||||||||    
T  5746748 gaaatttttgggtgtggcttaatcatggtgaggtgaaga 5746786  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31611232 - 31611301
Alignment:
Q  1 agcaaaaagtaatcaaattaagcacattaaaaaattagttgattgtatttaattatgaagtcccaatgag 70  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31611232 agcaaaaagtaatcaaattaagcacattaagaaattagttgattgtatttaattatgaagtcccaatgag 31611301  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 34092848 - 34092983
Alignment:
Q  150 attctttgattcaagtttgctttggtttattatg-gtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaattgga 248  Q
    ||||||||||||||||||||||||||  |||| | || |||||||||||| ||||||   |||||||||||||||| ||  ||||| |||||||||  ||    
T  34092848 attctttgattcaagtttgctttggtcaattaggtgttttttttcttcggtggaccgggagtagagaggtagtggatgcaaaaggactgttggaatatga 34092947  T
Q  249 ctttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    |||| ||||||||| |||| ||||||||||||||||    
T  34092948 ctttgtgggtgtggtttaaccatggggaggtgaaga 34092983  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 153 - 244
Target Start/End: Original strand, 21029685 - 21029776
Alignment:
Q  153 ctttgattcaagtttgctttggt-ttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaat 244  Q
    |||||||||||||||  |||||| ||||| |||||||||||| |||| ||||||  ||||||||||| |||||||||||| ||||||||||||    
T  21029685 ctttgattcaagttttgtttggtcttatt-tggtgttttttcctcggtggaccgggggtagagaggtggtggaagccgaatgagtgttggaat 21029776  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 244
Target Start/End: Original strand, 32316422 - 32316515
Alignment:
Q  151 ttctttgattcaagtttgctttggttta-ttatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaat 244  Q
    ||||||||||||||||| ||||||  || |||||||||||| ||||||| |||| |  |||| |||||| ||||| |||||| ||| ||||||||    
T  32316422 ttctttgattcaagtttactttgggctaattatggtgtttt-tcttcggtggacagggggtatagaggtggtggaggccgaatgagcgttggaat 32316515  T

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Target: scaffold0127 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 21614 - 21476
Alignment:
Q  146 gtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaatt 245  Q
    |||||||||||||||||||||||||||||  |||||| ||||||||||||||| ||| |   ||||||||||| ||||||| |||||||||||||||||     
T  21614 gtcaattctttgattcaagtttgctttggcctattatagtgttttttcttcggtggatcaggggtagagaggtggtggaaggcgaaggagtgttggaata 21515  T
Q  246 ggactttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    | | |||||||||||||||||||||||| ||||||||||    
T  21514 gaaatttttgggtgtggcttaatcatggtgaggtgaaga 21476  T

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Target: chr3 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 153 - 284
Target Start/End: Complemental strand, 36602322 - 36602190
Alignment:
Q  153 ctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaattggacttt 252  Q
    ||||||||||||||||||||| | ||||||||||||||||||||| ||||| |  | ||||||| || ||||||||||| ||||||||||||| ||||||    
T  36602322 ctttgattcaagtttgctttgttctattatggtgttttttcttcgacggactggagatagagagataatggaagccgaaagagtgttggaattagacttt 36602223  T
Q  253 ttgggtgtggcttaatcatgg-ggaggtgaaga 284  Q
    ||||||||||||||| ||||| |||||||||||    
T  36602222 ttgggtgtggcttaaccatggaggaggtgaaga 36602190  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 284
Target Start/End: Complemental strand, 4637439 - 4637307
Alignment:
Q  151 ttctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaattggact 250  Q
    |||||| |||||||||   |||||| ||||||||||||||| |||||| ||||| | ||| ||||||  ||||||||||||||||||||||||| |||||    
T  4637439 ttctttaattcaagttcaatttggtctattatggtgttttt-cttcggtggaccaagggttgagaggcggtggaagccgaaggagtgttggaataggact 4637341  T
Q  251 ttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    ||||||||||||||||||||||| ||||||||||    
T  4637340 ttttgggtgtggcttaatcatggtgaggtgaaga 4637307  T

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Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 146 - 284
Target Start/End: Complemental strand, 1820034 - 1819896
Alignment:
Q  146 gtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaatt 245  Q
    ||||| |||||||||||||||| ||||||| ||||||||||||| |||||||||| | ||  |||| | |||||||| ||| |||||||||| | |||||    
T  1820034 gtcaaatctttgattcaagttttctttggtctattatggtgtttcttcttcggcgaatcgggggtataaaggtagtgaaagtcgaaggagtgattgaatt 1819935  T
Q  246 ggactttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    | || |||| |||||||||||| ||||||||||||||||    
T  1819934 gaacattttaggtgtggcttaaccatggggaggtgaaga 1819896  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 146 - 267
Target Start/End: Complemental strand, 43344912 - 43344789
Alignment:
Q  146 gtcaattctttgattcaagtttgctttggtttattatggtgttttttcttcggcggaccga--cggtagagaggtagtggaagccgaaggagtgttggaa 243  Q
    |||||||||| ||| ||||||| ||||||| |||||||||||||||||||||  |||||||   ||||||||||| |||||| || | ||||||||||||    
T  43344912 gtcaattcttggatccaagtttactttggtctattatggtgttttttcttcgatggaccgagggggtagagaggtggtggaaaccaatggagtgttggaa 43344813  T
Q  244 ttggactttttgggtgtggcttaa 267  Q
    |   ||||||||||||||||||||    
T  43344812 tataactttttgggtgtggcttaa 43344789  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 244
Target Start/End: Complemental strand, 2613890 - 2613799
Alignment:
Q  155 ttgattcaagttt-gctttggt-ttattatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaat 244  Q
    ||||||||||||| |||||||| ||||||| |||||||||| |||| ||||    ||||||||||| |||| ||||||| ||||||||||||    
T  2613890 ttgattcaagttttgctttggtcttattatagtgttttttcctcggtggactaggggtagagaggtggtggtagccgaatgagtgttggaat 2613799  T

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Target: scaffold0620 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 8182 - 8317
Alignment:
Q  150 attctttgattcaagtttgctttggtttattatg-gtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaattgga 248  Q
    ||||||||||||||||||||||||||  |||| | || |||||||||||| ||||||   |||||||||||||||| ||  ||||| |||||||||  ||    
T  8182 attctttgattcaagtttgctttggtcaattaggtgttttttttcttcggtggaccgggagtagagaggtagtggatgcaaaaggactgttggaatatga 8281  T
Q  249 ctttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    |||| ||||||||| |||| ||||||||||||||||    
T  8282 ctttgtgggtgtggtttaaccatggggaggtgaaga 8317  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 208 - 284
Target Start/End: Complemental strand, 8987912 - 8987836
Alignment:
Q  208 ggtagagaggtagtggaagccgaaggagtgttggaattggactttttgggtgtggcttaatcatggggaggtgaaga 284  Q
    ||||||||||||||| ||||| ||||||||||  ||| ||||||||||||||||| |||| ||||||||| ||||||    
T  8987912 ggtagagaggtagtgaaagccaaaggagtgttcaaataggactttttgggtgtggtttaaccatggggagatgaaga 8987836  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Complemental strand, 33283944 - 33283874
Alignment:
Q  210 tagagaggtagtggaagccgaaggagtgttggaattggactttttgggtgtggcttaatcatggggaggtg 280  Q
    ||||||| | |||||||||||||||||||||||||  | |||||||||||||||| || ||||| ||||||    
T  33283944 tagagagatggtggaagccgaaggagtgttggaatatgtctttttgggtgtggctcaaccatggtgaggtg 33283874  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 244
Target Start/End: Original strand, 22200057 - 22200157
Alignment:
Q  146 gtcaattctttgattcaagttt-gctttggttt-attatggtgttttttcttcggcggaccgacggtagagaggtagtggaagccgaaggagtgttggaa 243  Q
    |||||| |||||||||| |||| |||| ||| | |||||||||||||||| |||| ||||||  ||||| | ||| |||||||| ||| |||||||||||    
T  22200057 gtcaatgctttgattcatgttttgcttaggtctgattatggtgttttttcctcggtggaccgggggtagtgtggtggtggaagctgaatgagtgttggaa 22200156  T
Q  244 t 244  Q
    |    
T  22200157 t 22200157  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 174
Target Start/End: Complemental strand, 15817425 - 15817397
Alignment:
Q  146 gtcaattctttgattcaagtttgctttgg 174  Q
    |||||||||||||||||||||||||||||    
T  15817425 gtcaattctttgattcaagtttgctttgg 15817397  T

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