View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_90 (Length: 291)
Name: NF1459_high_90
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_90 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 47711720 - 47711430
Alignment:
| Q |
1 |
ccatttcatagcaatcacctgtgctccaaaacaattcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttca |
100 |
Q |
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| T |
47711720 |
ccatttcatagcaatcacctgtgctccaaaacaatgcatgagtactaaagtttgtcttttttattgtttctaatttctatatacaatactgaatttttca |
47711621 |
T |
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| Q |
101 |
ttcatatattgcaaaaaggaaaaatatttactcagttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcg |
200 |
Q |
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| T |
47711620 |
ttcataaattgcaaaaaggaaaaatatttactcagttttcaacaaatatctgcattacaaggtcaaaattttcattattgtcaaaaataataccattgcg |
47711521 |
T |
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| Q |
201 |
cgagaagaagtgtggcgggtctctagtaaatggttcatctcctgtatcaacattcttgacttaggggggcatattacacctcatctttctc |
291 |
Q |
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| T |
47711520 |
cgagaagaagtgcggcgggtctctagtaaatggttcatctcctgtatcaacattcttgacttaggggggcatattacaccttatctttctc |
47711430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 179 - 291
Target Start/End: Original strand, 43305474 - 43305585
Alignment:
| Q |
179 |
tgtcaaaaataataccattgcgcgagaagaagtgtggcgggtctctagtaaatggttcatctcctgtatcaacattcttgacttaggggggcatattaca |
278 |
Q |
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| T |
43305474 |
tgtcaaaaataataccattgcacgagaagaagtgcggcggcgctctagcaaatggttcatctcctgtatcaacattcttgactta-gggggcatattaca |
43305572 |
T |
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| Q |
279 |
cctcatctttctc |
291 |
Q |
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| T |
43305573 |
cctcatctttctc |
43305585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 45603672 - 45603623
Alignment:
| Q |
40 |
gagtactaaagtttgtcttttttattgtttctaatttctatatacaatac |
89 |
Q |
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| T |
45603672 |
gagtgctaaagtttatcttttttattgtttctaatttctgtatacaatac |
45603623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 45603728 - 45603694
Alignment:
| Q |
1 |
ccatttcatagcaatcacctgtgctccaaaacaat |
35 |
Q |
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| T |
45603728 |
ccatttcatagcaatcacctgtgctccaaaacaat |
45603694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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