View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1459_high_92 (Length: 287)
Name: NF1459_high_92
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_92 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 38229606 - 38229496
Alignment:
| Q |
1 |
tttttcttcttcgtcgtttttctagttattccgttgttcatgctcatcacgaggctaatcgggttgcatataacttacctgaatttaattagactttagg |
100 |
Q |
| |
|
|||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38229606 |
tttttcatcttccttgtttttctagttattccgttgttcatgctcatcacgaggctaatcgggttgcatataacttacctgaatttaattagactttaga |
38229507 |
T |
|
| Q |
101 |
gtttgagacga |
111 |
Q |
| |
|
||||||||||| |
|
|
| T |
38229506 |
gtttgagacga |
38229496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 208 - 277
Target Start/End: Complemental strand, 38229399 - 38229330
Alignment:
| Q |
208 |
cacaacaaaacgtagttaagatgagaatccaaaatgcaaattaatccacacattccaatctattttcttc |
277 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38229399 |
cacaacaaaacatagttaagatgagaatccaaaatgcaaattaatccacacattccaatctattttcttc |
38229330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38223180 - 38223102
Alignment:
| Q |
1 |
tttttcttcttcgtcgtttttctagttattccgttgttcatgctcatcacgaggctaatcgggttgcatataacttacc |
79 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||| |
|
|
| T |
38223180 |
tttttcttcttcgtcatttttctagttattccgttgttcatgcttatcgtgaggctaatcgggtcgcatataacttacc |
38223102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 38222971 - 38222908
Alignment:
| Q |
208 |
cacaacaaaacgtagttaagatgagaatccaaaatgcaaattaatccacacattccaatctatt |
271 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38222971 |
cacaacaaaacaaagttaagatgagaatccaaaatgcaaattaatccatacattccaatctatt |
38222908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University