View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_high_95 (Length: 281)
Name: NF1459_high_95
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_high_95 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 150 - 277
Target Start/End: Complemental strand, 7185117 - 7184990
Alignment:
| Q |
150 |
aagcagaggttgccccatggatttctgctgctgcatcaactggggcaattggttcagggtcgaagagttttgttgcagttgagcagatgaagctagctgt |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7185117 |
aagcagaggttgccccatggatttctgctgctgcatcaactggggcaattggttcagggtcgaagagttttgttgcagttgagcagatgaagctagctgt |
7185018 |
T |
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| Q |
250 |
tgttgcagcctctgatattgttgttgta |
277 |
Q |
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| T |
7185017 |
tgttgcaacctctgatattgttgttgta |
7184990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 150 - 281
Target Start/End: Complemental strand, 7184949 - 7184812
Alignment:
| Q |
150 |
aagcagaggttgccccatggatttctgctgctgcatcaactggggcaattg------gttcagggtcgaagagttttgttgcagttgagcagatgaagct |
243 |
Q |
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||||||||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
7184949 |
aagcagaggttgccccatggatttcggctgctgcatcaacaagggcaattgctgttggttgagggtcaaagagttttgttgcagttgagcagatgaagcc |
7184850 |
T |
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| Q |
244 |
agctgttgttgcagcctctgatattgttgttgtagctg |
281 |
Q |
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| T |
7184849 |
agctgttgttgcagcctctgatattgttgttgtagctg |
7184812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 198 - 281
Target Start/End: Complemental strand, 7156113 - 7156030
Alignment:
| Q |
198 |
ttggttcagggtcgaagagttttgttgcagttgagcagatgaagctagctgttgttgcagcctctgatattgttgttgtagctg |
281 |
Q |
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| T |
7156113 |
ttggttcagggtcaaggagttttgttgcagttgagcagatgaagctagctgttgttgcagcctctgatattgttgttgtggctg |
7156030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 150 - 272
Target Start/End: Complemental strand, 7190133 - 7190005
Alignment:
| Q |
150 |
aagcagaggttgccccatggatttctgctgctgcatcaactggggcaattg------gttcagggtcgaagagttttgttgcagttgagcagatgaagct |
243 |
Q |
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|||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
7190133 |
aagctgaggttgccccatggatttctgctgctgcataaactgggacaattgctgttggttcagggtcatagagttttgttgcagttgaccagatgaagcc |
7190034 |
T |
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| Q |
244 |
agctgttgttgcagcctctgatattgttg |
272 |
Q |
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| T |
7190033 |
agctgctgttgctgcctctgatgttgttg |
7190005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 251
Target Start/End: Complemental strand, 7184762 - 7184662
Alignment:
| Q |
157 |
ggttgccccatggatttctgctgctgcatcaactggggcaattg------gttcagggtcgaagagttttgttgcagttgagcagatgaagctagctgtt |
250 |
Q |
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||||||||||||| |||| |||||||||||||||| |||||||| |||||||||| ||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
7184762 |
ggttgccccatgggtttcggctgctgcatcaactgaggcaattgctgttggttcagggtcaaagagctttgttgaagttgagcagatgaagccagctgtt |
7184663 |
T |
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| Q |
251 |
g |
251 |
Q |
| |
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| |
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| T |
7184662 |
g |
7184662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 7155909 - 7155856
Alignment:
| Q |
198 |
ttggttcagggtcgaagagttttgttgcagttgagcagatgaagctagctgttg |
251 |
Q |
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|||||| |||||| ||||||||||||| | ||||||||||||||| || ||||| |
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| T |
7155909 |
ttggttaagggtcaaagagttttgttgaaattgagcagatgaagccagttgttg |
7155856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1739063 - 1739030
Alignment:
| Q |
1 |
cttgcaaaataaacatgaaaaagtccttgaatcc |
34 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
1739063 |
cttgcaaaataagcatgaaaaagtccttgaatcc |
1739030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1760114 - 1760081
Alignment:
| Q |
1 |
cttgcaaaataaacatgaaaaagtccttgaatcc |
34 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
1760114 |
cttgcaaaataaacatgaaaaagaccttgaatcc |
1760081 |
T |
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