View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_1 (Length: 773)

Name: NF1459_low_1
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_1
NF1459_low_1
[»] chr6 (29 HSPs)
chr6 (156-745)||(31289814-31290370)
chr6 (1-158)||(31290408-31290571)
chr6 (514-730)||(27421059-27421275)
chr6 (562-744)||(26652118-26652300)
chr6 (562-744)||(26758086-26758268)
chr6 (537-687)||(26632715-26632865)
chr6 (537-687)||(26738691-26738841)
chr6 (378-475)||(27420964-27421061)
chr6 (410-626)||(31394770-31394987)
chr6 (162-210)||(26952498-26952546)
chr6 (162-210)||(26961991-26962039)
chr6 (162-210)||(26980289-26980337)
chr6 (173-210)||(26649356-26649393)
chr6 (173-210)||(26755324-26755361)
chr6 (113-158)||(27608250-27608295)
chr6 (113-158)||(27715637-27715682)
chr6 (10-49)||(2820373-2820412)
chr6 (111-158)||(26058891-26058938)
chr6 (111-158)||(26078861-26078908)
chr6 (10-68)||(5970098-5970156)
chr6 (11-69)||(8931591-8931649)
chr6 (10-68)||(9195744-9195802)
chr6 (10-68)||(9617445-9617503)
chr6 (10-68)||(15443706-15443764)
chr6 (10-68)||(16766708-16766766)
chr6 (7-56)||(10335378-10335427)
chr6 (11-68)||(26562701-26562758)
chr6 (124-157)||(26876539-26876572)
chr6 (7-52)||(29449689-29449734)
[»] scaffold0003 (2 HSPs)
scaffold0003 (514-730)||(66088-66304)
scaffold0003 (378-475)||(66302-66399)
[»] chr5 (7 HSPs)
chr5 (10-68)||(22423802-22423860)
chr5 (5-63)||(4991372-4991429)
chr5 (19-62)||(16374338-16374381)
chr5 (10-68)||(21522761-21522819)
chr5 (10-68)||(21533327-21533385)
chr5 (11-64)||(41558648-41558701)
chr5 (1-62)||(43208270-43208331)
[»] chr3 (4 HSPs)
chr3 (7-112)||(45382751-45382858)
chr3 (1-69)||(16192739-16192807)
chr3 (1-68)||(8039825-8039892)
chr3 (1-54)||(28576718-28576771)
[»] chr1 (9 HSPs)
chr1 (1-117)||(264606-264724)
chr1 (10-68)||(44482241-44482299)
chr1 (2-46)||(23605132-23605176)
chr1 (299-329)||(18008612-18008642)
chr1 (10-68)||(25361897-25361955)
chr1 (10-64)||(34712377-34712431)
chr1 (5-51)||(43609825-43609871)
chr1 (1-62)||(6427352-6427413)
chr1 (11-56)||(14332420-14332465)
[»] chr7 (7 HSPs)
chr7 (10-68)||(6028636-6028694)
chr7 (10-63)||(7328686-7328739)
chr7 (10-71)||(7438717-7438778)
chr7 (1-64)||(31808503-31808566)
chr7 (7-54)||(43160492-43160539)
chr7 (10-64)||(17307904-17307958)
chr7 (10-68)||(24339653-24339711)
[»] chr2 (1 HSPs)
chr2 (10-56)||(44605141-44605187)
[»] scaffold0349 (1 HSPs)
scaffold0349 (113-158)||(16263-16308)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-62)||(99895-99956)
[»] chr4 (3 HSPs)
chr4 (10-69)||(24613690-24613749)
chr4 (10-71)||(4383379-4383439)
chr4 (1-46)||(44796974-44797019)
[»] chr8 (5 HSPs)
chr8 (10-68)||(22651987-22652045)
chr8 (120-158)||(29270983-29271021)
chr8 (10-68)||(29447100-29447158)
chr8 (7-61)||(31681827-31681881)
chr8 (1-58)||(12985394-12985451)


Alignment Details
Target: chr6 (Bit Score: 456; Significance: 0; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 156 - 745
Target Start/End: Complemental strand, 31290370 - 31289814
Alignment:
Q  156 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290370 tgtcagtatcaaacactatatattgcaagataaaacaacaactaacctgactcaaaattacaccatgagcaaaattagcttatatagtgagcatacaagt 31290271  T
Q  256 actagtaaaatagaatgtactactctatagtactacactaagataacttgtactacaagttatctatctaagctatataatatcctcattttgttcacgg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||| ||| ||    
T  31290270 actagtaaaatagaatgtactactctatagtactacactaagataacttgtacta-----------tctaagctatataatatcctcattttgctcatgg 31290182  T
Q  356 tgtaatagtctccattgaagagaaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattg 455  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290181 tgtaatagtctccatagaagagaaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattg 31290082  T
Q  456 gtagcaacagaggagaaaaagtgtgacagcaattgccggaaatcgccgccagggaacgaaatcagcactcatcaccgacgggatcaaagattacgatgca 555  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290081 gtagcaacagaggagaaaaagtgtgacagcaatttccggaaatcgccgccagggaacgaaatcagcactcatcaccgacgggatcaaagattacgatgca 31289982  T
Q  556 gaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttga 655  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
T  31289981 gaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatc---------- 31289892  T
Q  656 gggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacattc 745  Q
      ||||||          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31289891 --gatcgc----------gtccatagggaatcctcacaatcgagccggttaggaagtctatctcgtaaaagtctcatactaaacacattc 31289814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 31290571 - 31290408
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgta------attacatatgtcggtgtcgtgtcggtgtcaaatacacacatgttggacaccagac 94  Q
    |||||||||||||||||||||||||||||||||||||||      |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  31290571 caccgatagtaatttgagaaaataacataaatgaatgtatacgtaattacatatgtcggtgtcatgtcggtgtcaaatacacacatgttggacaccagac 31290472  T
Q  95 acgccttcaatgagaagtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  31290471 acgccttcaatgagaagtgtttgggaattgaatacaggtgcctcgagcctcatgtagtttctgt 31290408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 514 - 730
Target Start/End: Original strand, 27421059 - 27421275
Alignment:
Q  514 aaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtca 613  Q
    |||||||||||||||||||  ||||| ||| || | ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||| || ||||    
T  27421059 aaatcagcactcatcaccgctgggataaaatatgatgatgcagaaaccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtca 27421158  T
Q  614 gtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtc 713  Q
    |||||  |||  |  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  27421159 gtgagcagaaaggtgaacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcc 27421258  T
Q  714 tatctcgtaaaagtctc 730  Q
    ||||| |||| ||||||    
T  27421259 tatcttgtaagagtctc 27421275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 562 - 744
Target Start/End: Complemental strand, 26652300 - 26652118
Alignment:
Q  562 agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatc 661  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| ||||||| |||| |||||||| |||||||||| | |||| |||||||||||||||    
T  26652300 agggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatc 26652201  T
Q  662 gcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacatt 744  Q
     | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||    
T  26652200 acatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt 26652118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 562 - 744
Target Start/End: Complemental strand, 26758268 - 26758086
Alignment:
Q  562 agggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatc 661  Q
    ||||||||||||||||||||||||||| |||||||||||  ||| ||||||| |||| |||||||| |||||||||| | |||| |||||||||||||||    
T  26758268 agggatattgaagctgaaggtcgggtgatgtgatgtttctgccaatgcgtcattgagcggaactgcgaacatttgactgagatcaaaagtttgagggatc 26758169  T
Q  662 gcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtctatctcgtaaaagtctcatactaaacacatt 744  Q
     | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||| |||| || || |||||||||    
T  26758168 acatcaaggaatgtccatagggaatcctcacaatcgagccggttatgaagtctatcttgtaagagtcccaaaccaaacacatt 26758086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 537 - 687
Target Start/End: Complemental strand, 26632865 - 26632715
Alignment:
Q  537 gatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttg 636  Q
    |||||||||||| |||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||| | || |||||    
T  26632865 gatcaaagattaggatgcagataccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttg 26632766  T
Q  637 accgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 687  Q
    ||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26632765 accgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26632715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 537 - 687
Target Start/End: Complemental strand, 26738841 - 26738691
Alignment:
Q  537 gatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtcagtgagtggaactgcaaacatttg 636  Q
    |||||||||||| |||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||  |||||| | || |||||    
T  26738841 gatcaaagattaggatgcagataccagggatactgaagctgaaggtcgggtgttgtgatgtttccaccactgcatcagtgaacggaactacgaagatttg 26738742  T
Q  637 accgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatc 687  Q
    ||||||||  || |||| |||||| | ||||||||||||||||||| ||||    
T  26738741 accgggatgaaatgtttaagggattgggtcaaggaatgtccataggaaatc 26738691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 378 - 475
Target Start/End: Original strand, 27420964 - 27421061
Alignment:
Q  378 aaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaa 475  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  |||||||| ||||||||||||||    
T  27420964 aaagagtgctatggatgtcactcaaatccaacgccagagacaagaagctgaaaaccctaaaattttctctatcagttggtagccacagaggagaaaaa 27421061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 410 - 626
Target Start/End: Complemental strand, 31394987 - 31394770
Alignment:
Q  410 gccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaagtgtgacagcaattgccggaaatcgccgccaggg 509  Q
    ||||||||||||||| |  | |||||||  ||| ||||||||| ||  ||||| |||||||||||| |||||||| |||   | ||||| ||||||        
T  31394987 gccagagacaagaagattcaaaccccaagttttgctctatccaatgccagcaatagaggagaaaaactgtgacagaaatgatcagaaattgccgcccaat 31394888  T
Q  510 aacgaaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgttt-ccaccactg 608  Q
    ||||||||| ||  |||| ||||   |||| |||||| | |||||| |||  | | |||||||||||||||||| |||||||||| |||| |||||||||    
T  31394887 aacgaaatctgcgttcataaccgcatggattaaagatgatgatgcaaaaaccatgtatattgaagctgaaggtcaggtgttgtgacgtttaccaccactg 31394788  T
Q  609 cgtcagtgagtggaactg 626  Q
    || ||||| | |||||||    
T  31394787 cgacagtgcggggaactg 31394770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 26952546 - 26952498
Alignment:
Q  162 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 210  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26952546 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 26962039 - 26961991
Alignment:
Q  162 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 210  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  26962039 tatcaaatactatatattgcaagataaaacaacaacaaacctgactcaa 26961991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 26980337 - 26980289
Alignment:
Q  162 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 210  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  26980337 tatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaa 26980289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 26649393 - 26649356
Alignment:
Q  173 atatattgcaagataaaacaacaactaacctgactcaa 210  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26649393 atatattgcaagataaaacaacaacgaacctgactcaa 26649356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 26755361 - 26755324
Alignment:
Q  173 atatattgcaagataaaacaacaactaacctgactcaa 210  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  26755361 atatattgcaagataaaacaacaacgaacctgactcaa 26755324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 27608250 - 27608295
Alignment:
Q  113 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||    
T  27608250 gtttgggaattcaaaataggtgcatccagcctcatgtagtttctgt 27608295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 27715637 - 27715682
Alignment:
Q  113 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  27715637 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 27715682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 49
Target Start/End: Complemental strand, 2820412 - 2820373
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatg 49  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  2820412 taatttgagaaaataaaataaatgaatgtaatcacatatg 2820373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 26058938 - 26058891
Alignment:
Q  111 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26058938 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26058891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 158
Target Start/End: Complemental strand, 26078908 - 26078861
Alignment:
Q  111 gtgtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    |||||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  26078908 gtgtttgggaatagaatatgggtgcatccagactcatgtagtttctgt 26078861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 5970156 - 5970098
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||| ||||| |||||| | | |||||||||| |||| |||||||||||||||||    
T  5970156 taatttgaaaaaatcacataattcagtgtaattacaaatgtgggtgtcgtgtcggtgtc 5970098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 8931649 - 8931591
Alignment:
Q  11 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 69  Q
    |||||||||||||||||||| | | | |||||| || ||||| ||||||||||||||||    
T  8931649 aatttgagaaaataacataattcagtataattatatgtgtcgatgtcgtgtcggtgtca 8931591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 9195802 - 9195744
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||| ||||||    
T  9195802 taatttgagaaaatgacataatttagtgtaattatatgtgtcggtgtcgtgtaggtgtc 9195744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 9617445 - 9617503
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | |||||||||| || ||||||||||||  |||||||    
T  9617445 taatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcgtcgcggtgtc 9617503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 15443706 - 15443764
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    ||||||||||||||||||||| | ||| |||||| |||||| ||||| |||||| ||||    
T  15443706 taatttgagaaaataacataattcaatataattatatatgttggtgttgtgtcgatgtc 15443764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 16766708 - 16766766
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  16766708 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 16766766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 10335427 - 10335378
Alignment:
Q  7 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 56  Q
    ||||||||||||||||| |||||| |||||||||| | || |||||||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtgtcggtgt 10335378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 26562701 - 26562758
Alignment:
Q  11 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    ||||||||||||| |||||| | | |||||||| || ||||| |||||||||||||||    
T  26562701 aatttgagaaaatcacataattcagtgtaattatatgtgtcgatgtcgtgtcggtgtc 26562758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 26876572 - 26876539
Alignment:
Q  124 gaatataggtgcctccagcctcatgtagtttctg 157  Q
    |||||||||||| |||||||||||||||||||||    
T  26876572 gaatataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 29449689 - 29449734
Alignment:
Q  7 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcg 52  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtgtcg 29449734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 514 - 730
Target Start/End: Complemental strand, 66304 - 66088
Alignment:
Q  514 aaatcagcactcatcaccgacgggatcaaagattacgatgcagaaattagggatattgaagctgaaggtcgggtgttgtgatgtttccaccactgcgtca 613  Q
    |||||||||||||||||||  ||||| ||| || | ||||||||||  |||||||||||||||||||||||||||||||||||||||  ||| || ||||    
T  66304 aaatcagcactcatcaccgctgggataaaatatgatgatgcagaaaccagggatattgaagctgaaggtcgggtgttgtgatgtttctgccattgtgtca 66205  T
Q  614 gtgagtggaactgcaaacatttgaccgggatcgaaagtttgagggatcgcgtcaaggaatgtccatagggaatcctcacaatcgagctggttaggaagtc 713  Q
    |||||  |||  |  |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |    
T  66204 gtgagcagaaaggtgaacatttgaccgggattgaaagtttgagggatcgtgtcaaggaatgtccatagggaatcctcacaatcgagccggttaggaagcc 66105  T
Q  714 tatctcgtaaaagtctc 730  Q
    ||||| |||| ||||||    
T  66104 tatcttgtaagagtctc 66088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 66399 - 66302
Alignment:
Q  378 aaagaatgctattaatgtcactcaaatccaacgccagagacaagaagctgaacaccccaaaatttcctctatccattggtagcaacagaggagaaaaa 475  Q
    ||||| ||||||  |||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  |||||||| ||||||||||||||    
T  66399 aaagagtgctatggatgtcactcaaatccaacgccagagacaagaagctgaaaaccctaaaattttctctatcagttggtagccacagaggagaaaaa 66302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 22423860 - 22423802
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | ||| |||||| ||||||||||||||||||||||||    
T  22423860 taatttgagaaaatcacataattcaatataattatatatgtcggtgtcgtgtcggtgtc 22423802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 63
Target Start/End: Complemental strand, 4991429 - 4991372
Alignment:
Q  5 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 63  Q
    ||||||||||||||||||| ||||||||  ||||||||| || ||||||||||||||||    
T  4991429 gatagtaatttgagaaaatgacataaat-catgtaattagatgtgtcggtgtcgtgtcg 4991372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 16374381 - 16374338
Alignment:
Q  19 aaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 62  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  16374381 aaaataacataaatcagtgtaattacatgtgtcggtgtcgtgtc 16374338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 21522761 - 21522819
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21522761 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21522819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 21533327 - 21533385
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||| | |||||||||||| | | ||||||||||  |||||||||||||||||||||    
T  21533327 taattttaaaaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtc 21533385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 64
Target Start/End: Complemental strand, 41558701 - 41558648
Alignment:
Q  11 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 64  Q
    ||||||||||||| |||||| | |||||||||| || |||| ||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcgg 41558648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 43208331 - 43208270
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 62  Q
    ||||||||||||||||||||||| |||||| | |||||||| | || |||| |||| |||||    
T  43208331 caccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtc 43208270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 45382751 - 45382858
Alignment:
Q  7 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgccttcaa 104  Q
    ||||||||| |||||||||||||  |||||||||| ||||||||||||| | ||| ||||||| | ||  ||| |||| ||||||| |||| |||||| |    
T  45382751 tagtaatttaagaaaataacatatttgaatgtaatcacatatgtcggtgacatgttggtgtcagacacagacaaatgtcggacaccggacatgccttcga 45382850  T
Q  105 tgagaagt 112  Q
    | ||||||    
T  45382851 tcagaagt 45382858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 16192807 - 16192739
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 69  Q
    ||||| || ||||||||||||||||||||| | | |||||||| || ||| | ||||||||||||||||    
T  16192807 caccgttaataatttgagaaaataacataattcagtgtaattatatgtgttgatgtcgtgtcggtgtca 16192739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 8039892 - 8039825
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    ||||| || |||||||||||||| | |||| | | |||||||| || |||||||||||||||||||||    
T  8039892 caccgctaataatttgagaaaattatataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 8039825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28576718 - 28576771
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 54  Q
    ||||| || |||||||||||||| ||| || ||||||||||||||| |||||||    
T  28576718 caccggtaataatttgagaaaatgacaaaattgaatgtaattacatgtgtcggt 28576771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 264606 - 264724
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaatac--acacatgttggacaccagacacgc 98  Q
    |||| ||| |||||| ||||| |||||||  | |||||||| |||| ||| ||||||||||| ||||| || ||  ||| ||||||| |||| |||||||    
T  264606 caccaatattaatttaagaaagtaacatacttaaatgtaatcacatgtgttggtgtcgtgtcagtgtcgaacacaaacatatgttgggcacctgacacgc 264705  T
Q  99 cttcaatgagaagtgtttg 117  Q
    | || ||||||||||||||    
T  264706 catctatgagaagtgtttg 264724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 44482241 - 44482299
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | | |||||||| || |||||||||||||||||||||    
T  44482241 taatttgagaaaatcacataattcagtgtaattatatgtgtcggtgtcgtgtcggtgtc 44482299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  2 accgatagtaatttgagaaaataacataaatgaatgtaattacat 46  Q
    |||||||||||||||||||||||||| || |||||||||| ||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 299 - 329
Target Start/End: Complemental strand, 18008642 - 18008612
Alignment:
Q  299 taacttgtactacaagttatctatctaagct 329  Q
    |||||||||||||||||||||||||||||||    
T  18008642 taacttgtactacaagttatctatctaagct 18008612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 25361897 - 25361955
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | | |||||||| || |||| ||||||||||||||||    
T  25361897 taatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgtcggtgtc 25361955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 34712431 - 34712377
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 64  Q
    ||||||||||||||||||||| | | |||||||| || |||| ||||||||||||    
T  34712431 taatttgagaaaataacataatttagtgtaattatatgtgtcagtgtcgtgtcgg 34712377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 43609871 - 43609825
Alignment:
Q  5 gatagtaatttgagaaaataacataaatgaatgtaattacatatgtc 51  Q
    |||| ||||||||||||||||||||| |||||||||| |||| ||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtgtc 43609825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 6427352 - 6427413
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 62  Q
    ||||| || |||||||||||||| |||||| | |||||||||| || ||| |||||||||||    
T  6427352 caccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtc 6427413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 14332420 - 14332465
Alignment:
Q  11 aatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 56  Q
    ||||||||||||| |||||| | |||||||| ||||||||||||||    
T  14332420 aatttgagaaaatgacataattcaatgtaatcacatatgtcggtgt 14332465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 6028636 - 6028694
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||| || ||||||||| | |||||||||||| |||||||||||||||| |||||    
T  6028636 taatttgaaaatataacataatttaatgtaattacaaatgtcggtgtcgtgtcagtgtc 6028694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 7328739 - 7328686
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcg 63  Q
    ||||||||||||||||||||| | | |||||||| || ||||||||||||||||    
T  7328739 taatttgagaaaataacataatttagtgtaattatatgtgtcggtgtcgtgtcg 7328686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 7438717 - 7438778
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 71  Q
    |||||||| ||||| |||||| | ||||||||||||  |||||||||| |||||||||||||    
T  7438717 taatttgaaaaaatcacataattcaatgtaattacaagtgtcggtgtcatgtcggtgtcaaa 7438778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31808566 - 31808503
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 64  Q
    |||||||| |||||||||||||| ||| || | |||||||| |||| ||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgg 31808503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 43160492 - 43160539
Alignment:
Q  7 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggt 54  Q
    ||||||||| |||||||||||||| |||||||||| |||| |||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtgtcggt 43160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 17307904 - 17307958
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcgg 64  Q
    ||||||||||||||||||||| | | |||||||| || ||| |||||||||||||    
T  17307904 taatttgagaaaataacataattcagtgtaattatatgtgttggtgtcgtgtcgg 17307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 24339653 - 24339711
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||| ||||| |||||| | | ||||||||||  |||||||||||||||||||||    
T  24339653 taatttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtc 24339711  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Complemental strand, 44605187 - 44605141
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgt 56  Q
    ||||||||||||||||||||| | ||||||||||||| |||||||||    
T  44605187 taatttgagaaaataacataattcaatgtaattacatgtgtcggtgt 44605141  T

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Target: scaffold0349 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 16308 - 16263
Alignment:
Q  113 gtttgggaattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    ||||||||||| ||||||||||| |||||||| |||||||||||||    
T  16308 gtttgggaatttaatataggtgcatccagcctgatgtagtttctgt 16263  T

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Target: scaffold0022 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 99895 - 99956
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtc 62  Q
    |||||||| |||||| |||||||||||||| | |||||||||| || ||| |||||||||||    
T  99895 caccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 24613749 - 24613690
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtca 69  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| |||||||||||    
T  24613749 taatttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtca 24613690  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 4383379 - 4383439
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtcaaa 71  Q
    |||||||| ||||| |||||| | | |||||||||| ||||| |||||||||||||||||||    
T  4383379 taatttga-aaaatcacataattcagtgtaattacaaatgtcagtgtcgtgtcggtgtcaaa 4383439  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44797019 - 44796974
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacat 46  Q
    |||||| | ||||||||||||||||||||| | |||||||||||||    
T  44797019 caccgacaataatttgagaaaataacataattcaatgtaattacat 44796974  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 22651987 - 22652045
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||| ||||| |||||| | ||| ||||||||  |||||||||||||||||||||    
T  22651987 taatttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtc 22652045  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 29270983 - 29271021
Alignment:
Q  120 aattgaatataggtgcctccagcctcatgtagtttctgt 158  Q
    |||||||||||||||| ||||| ||||||||||||||||    
T  29270983 aattgaatataggtgcatccagtctcatgtagtttctgt 29271021  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 68
Target Start/End: Complemental strand, 29447158 - 29447100
Alignment:
Q  10 taatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgtcggtgtc 68  Q
    |||||||||||||| |||||| | ||||||| ||||  |||||||||| ||||||||||    
T  29447158 taatttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtc 29447100  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 31681881 - 31681827
Alignment:
Q  7 tagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcgtgt 61  Q
    ||||||||| ||||||| |||||| |||||| ||| |||| ||||||||||||||    
T  31681881 tagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12985394 - 12985451
Alignment:
Q  1 caccgatagtaatttgagaaaataacataaatgaatgtaattacatatgtcggtgtcg 58  Q
    |||| ||| |||||||||||||| |||||| | |||||||| | ||||||||||||||    
T  12985394 cacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcg 12985451  T

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