View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_106 (Length: 274)
Name: NF1459_low_106
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_106 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 48724255 - 48724510
Alignment:
| Q |
3 |
tgcagcatcacaattccagtgaattctgaataccattctgagggaaccctaaaaagtcttcatctaaaagagaaagtaacacatcttcatttctacctct |
102 |
Q |
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| T |
48724255 |
tgcagcatcacaattccagtgaattctgaataccattctgagggaaccctaaaaagtcttcatctaaaagagaaagtaacacatcttcatttctacctct |
48724354 |
T |
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| Q |
103 |
ttgacatccttagtggaaacaaacccactgcagtacaaattgcacaaccagacaccaccgttggaccaaaatcagcaacaccatttggccatgtgtatgc |
202 |
Q |
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| T |
48724355 |
ttgacatccttagtggaaacaaacccactgcagtacaaattgcacaaccagacaccaccgttggaccaaaatcagcaacaccatttggccatgtgtatgc |
48724454 |
T |
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| Q |
203 |
aattgatgatcctttaagagagggaccaaataaaagttctaaagtgattggaaatg |
258 |
Q |
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| T |
48724455 |
aattgatgatcctttaagagagggaccaaataaaagttctaaagtgattggaaatg |
48724510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 6 - 258
Target Start/End: Original strand, 48727116 - 48727365
Alignment:
| Q |
6 |
agcatcacaattccagtgaattctgaataccattctgagggaaccctaaaaagtcttcatctaaaagagaaagtaacacatcttcatttctacctctttg |
105 |
Q |
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| T |
48727116 |
agcatcacaattcaagtgaattctgaataccattcagaaagaagcatacacagtcttcatctcaaagagaaagtaacacgtcttcatttttacatcttcg |
48727215 |
T |
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| Q |
106 |
acatccttagtggaaacaaacccactgcagtacaaattgcacaaccagacaccaccgttggaccaaaatcagcaacaccatttggccatgtgtatgcaat |
205 |
Q |
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| T |
48727216 |
acattcttagtggaaacaaaccaactgcagtagaagttgcacatccaaacatcactgttggaccaaa---agcaaccccatttggccatgtgtatgcaat |
48727312 |
T |
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| Q |
206 |
tgatgatcctttaagagagggaccaaataaaagttctaaagtgattggaaatg |
258 |
Q |
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| T |
48727313 |
cgatgatcccttaagagagggtccaaatgaaagttcaaaattgattggaaatg |
48727365 |
T |
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