View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_107 (Length: 269)

Name: NF1459_low_107
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_107
NF1459_low_107
[»] chr6 (10 HSPs)
chr6 (1-148)||(31290547-31290693)
chr6 (219-269)||(31290903-31290953)
chr6 (223-269)||(27652770-27652816)
chr6 (62-149)||(27656883-27656973)
chr6 (223-259)||(26640274-26640310)
chr6 (223-259)||(26746240-26746276)
chr6 (225-259)||(26650811-26650845)
chr6 (225-259)||(26756779-26756813)
chr6 (225-259)||(26964052-26964086)
chr6 (225-269)||(27506774-27506818)
[»] chr4 (2 HSPs)
chr4 (3-41)||(18727855-18727893)
chr4 (227-255)||(18719331-18719359)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31290547 - 31290693
Alignment:
Q  1 ttattttctcaaattactatcggtgtcgacaaatcaatgtcaatgttaattt-cccgtgtctgtgcttcgtagggaggatattttcccactccattgatg 99  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||||    
T  31290547 ttattttctcaaattactatcggtgtcgacgaatcaatgtcaatgttaattttcccgtgtgtgt--ttcgtagggaggatattttcccactccattgatg 31290644  T
Q  100 gatgtttgataaattataaatgaaaacattttacacttaaagcttacca 148  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  31290645 gatgtttgataaattataaatgtaaacattttacacttaaagcttacca 31290693  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 31290903 - 31290953
Alignment:
Q  219 gatttggcaaatggaagtggagaatttcgtttcataactcaaagttttggt 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31290903 gatttggcaaatggaagtggagaatttcgtttcataactcaaagttttggt 31290953  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 27652816 - 27652770
Alignment:
Q  223 tggcaaatggaagtggagaatttcgtttcataactcaaagttttggt 269  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||    
T  27652816 tggcaaatggaagtggagaatttcgtttcataactcaaaattttggt 27652770  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 27656973 - 27656883
Alignment:
Q  62 gtgcttcgtagggaggatatttt--cccactccattgatggatgtttgataaattataaatgaaaaca-ttttacacttaaagcttaccaa 149  Q
    ||||||| |||||||||||||||  ||| || |||||||||| | || |||||||||||||||||||| |||||||| |||| ||||||||    
T  27656973 gtgcttcatagggaggatattttttcccgcttcattgatggaagctttataaattataaatgaaaacatttttacacataaatcttaccaa 27656883  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 26640274 - 26640310
Alignment:
Q  223 tggcaaatggaagtggagaatttcgtttcataactca 259  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26640274 tggcaaatggaaatggagaatttcgtttcataactca 26640310  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 26746240 - 26746276
Alignment:
Q  223 tggcaaatggaagtggagaatttcgtttcataactca 259  Q
    |||||||||||| ||||||||||||||||||||||||    
T  26746240 tggcaaatggaaatggagaatttcgtttcataactca 26746276  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 26650811 - 26650845
Alignment:
Q  225 gcaaatggaagtggagaatttcgtttcataactca 259  Q
    |||||||||||||||||||||| ||||||||||||    
T  26650811 gcaaatggaagtggagaatttcctttcataactca 26650845  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 26756779 - 26756813
Alignment:
Q  225 gcaaatggaagtggagaatttcgtttcataactca 259  Q
    |||||||||||||||||||||| ||||||||||||    
T  26756779 gcaaatggaagtggagaatttcctttcataactca 26756813  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 259
Target Start/End: Original strand, 26964052 - 26964086
Alignment:
Q  225 gcaaatggaagtggagaatttcgtttcataactca 259  Q
    |||||||||||||||||||||| ||||||||||||    
T  26964052 gcaaatggaagtggagaatttcctttcataactca 26964086  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 27506818 - 27506774
Alignment:
Q  225 gcaaatggaagtggagaatttcgtttcataactcaaagttttggt 269  Q
    |||||||||||||  |||| |||||||||| ||||||||||||||    
T  27506818 gcaaatggaagtgacgaatatcgtttcatagctcaaagttttggt 27506774  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 18727893 - 18727855
Alignment:
Q  3 attttctcaaattactatcggtgtcgacaaatcaatgtc 41  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  18727893 attttctcaaattactattggtgttgacaaatcaatgtc 18727855  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 18719359 - 18719331
Alignment:
Q  227 aaatggaagtggagaatttcgtttcataa 255  Q
    |||||||||||||||||||||||||||||    
T  18719359 aaatggaagtggagaatttcgtttcataa 18719331  T

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