View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_108 (Length: 266)
Name: NF1459_low_108
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_108 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 34 - 250
Target Start/End: Original strand, 36615988 - 36616206
Alignment:
| Q |
34 |
aatttagtgcactcaacgttaaattcaaaacatgcattcaaaagaatacaacctataaaatttagctatcaatattaccttatcacattcacatacaatc |
133 |
Q |
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| T |
36615988 |
aattttgtgcactcaacattaaatttaaaacatgcattcaaaagactacaacctataaaatttagctatcaatattaccttatcacattcacatacaatc |
36616087 |
T |
|
| Q |
134 |
caatgaataaataatatacaagcatctagatatttgcccacaaactcgcatt--tattcaaaagaaatttattgatttccatgcatgtttgaacgagtga |
231 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36616088 |
caatgaataaataaaatacaagcatctagatatttgcccacaaactcgcatttatattcaaaagaaatttattgatttccatgcatgtttgaacgagtga |
36616187 |
T |
|
| Q |
232 |
ataacaacctcaatctaat |
250 |
Q |
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||||||||||||||||||| |
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| T |
36616188 |
ataacaacctcaatctaat |
36616206 |
T |
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