View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1459_low_109 (Length: 262)

Name: NF1459_low_109
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1459_low_109
NF1459_low_109
[»] chr1 (3 HSPs)
chr1 (8-205)||(10354775-10354973)
chr1 (198-247)||(10354232-10354281)
chr1 (198-244)||(3774506-3774552)
[»] chr5 (2 HSPs)
chr5 (198-246)||(24137470-24137518)
chr5 (201-246)||(11320614-11320659)
[»] chr7 (4 HSPs)
chr7 (198-246)||(26403375-26403423)
chr7 (198-245)||(46963254-46963301)
chr7 (198-247)||(24486666-24486715)
chr7 (198-245)||(3890073-3890121)
[»] chr2 (3 HSPs)
chr2 (198-246)||(8986800-8986848)
chr2 (198-245)||(38583680-38583727)
chr2 (198-246)||(32291027-32291075)
[»] chr4 (1 HSPs)
chr4 (198-245)||(16871525-16871572)
[»] chr3 (1 HSPs)
chr3 (197-244)||(50296159-50296206)
[»] chr6 (2 HSPs)
chr6 (198-247)||(33424170-33424219)
chr6 (198-246)||(9290830-9290878)


Alignment Details
Target: chr1 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 8 - 205
Target Start/End: Complemental strand, 10354973 - 10354775
Alignment:
Q  8 taatgaaaacaaatatgcacatatagttttcaattgatgtgagcaaagtgaaaatattaatttgttgtttccaacgnnnnnnnatatgataactacaaga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  10354973 taatgaaaacaaatatgcacatatagttttcaattgatgtgagcaaagtgaaaatattaatttgttgtttccaacgtttttttatatgataactacaaga 10354874  T
Q  108 tcaacaacttttctagtggttgtgtttgaataatatattcaaatnnnnnnngatgattttttattgaatgctcttg-ttactatgttgaactataaagt 205  Q
    ||||||||||||||||||||||| ||||||||||||||||||||       ||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  10354873 tcaacaacttttctagtggttgtatttgaataatatattcaaatataaaaagatgattttttattgcatgctcttgtttactatgttgaactataaagt 10354775  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 10354281 - 10354232
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaagt 247  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10354281 tataaagttctaacactactcttcaagctaaagcttactaagctttaagt 10354232  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 3774506 - 3774552
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagcttta 244  Q
    |||||| |||||||||||| | ||||| |||||||||||||||||||    
T  3774506 tataaacttctaacattacccctcaagttaaagcttactaagcttta 3774552  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 24137518 - 24137470
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    ||||||||||||||| ||| | |||||||||||||||||||||||||||    
T  24137518 tataaagttctaacactacccctcaagctaaagcttactaagctttaag 24137470  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 11320614 - 11320659
Alignment:
Q  201 aaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    |||||||||||| ||| | ||||||| |||||||||||||||||||    
T  11320614 aaagttctaacactacccatcaagctgaagcttactaagctttaag 11320659  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 26403423 - 26403375
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    ||||||||||||||| ||| | ||||||||||| |||||||||||||||    
T  26403423 tataaagttctaacactacccctcaagctaaagtttactaagctttaag 26403375  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 46963254 - 46963301
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaa 245  Q
    ||||||||||||||| ||| | ||||||| ||||||||||||||||||    
T  46963254 tataaagttctaacactacccctcaagctgaagcttactaagctttaa 46963301  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 24486666 - 24486715
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaagt 247  Q
    |||||| |||||||| ||| ||| ||| ||||||||||||||||||||||    
T  24486666 tataaacttctaacactacccttgaagttaaagcttactaagctttaagt 24486715  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 3890121 - 3890073
Alignment:
Q  198 tataaagttctaacat-tactcttcaagctaaagcttactaagctttaa 245  Q
    |||||||||||||||  ||| ||| ||||||||||||||||||||||||    
T  3890121 tataaagttctaacaactacactttaagctaaagcttactaagctttaa 3890073  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 8986848 - 8986800
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    ||||||||||||||| ||| | ||||||| |||||||||||||||||||    
T  8986848 tataaagttctaacactacccctcaagctgaagcttactaagctttaag 8986800  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Original strand, 38583680 - 38583727
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaa 245  Q
    ||||||||||||||| ||| | ||||||| ||||||||||||||||||    
T  38583680 tataaagttctaacactacccctcaagctgaagcttactaagctttaa 38583727  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 32291075 - 32291027
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    ||||||| ||||||| ||| | ||||||| |||||||||||||||||||    
T  32291075 tataaagatctaacactacccctcaagctgaagcttactaagctttaag 32291027  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 16871572 - 16871525
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaa 245  Q
    ||||||||||||||| ||| | ||||||| ||||||||||||||||||    
T  16871572 tataaagttctaacactacccctcaagctgaagcttactaagctttaa 16871525  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 50296206 - 50296159
Alignment:
Q  197 ctataaagttctaacattactcttcaagctaaagcttactaagcttta 244  Q
    |||||||||||||||||||| | ||||||  |||||||||||||||||    
T  50296206 ctataaagttctaacattacccctcaagccgaagcttactaagcttta 50296159  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 33424170 - 33424219
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaagt 247  Q
    ||||||||||||||| ||| | ||||| | ||||||||||||||||||||    
T  33424170 tataaagttctaacactacccctcaagttgaagcttactaagctttaagt 33424219  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 9290830 - 9290878
Alignment:
Q  198 tataaagttctaacattactcttcaagctaaagcttactaagctttaag 246  Q
    ||||||||||||||||||||| | ||||| ||| |||| ||||||||||    
T  9290830 tataaagttctaacattactcctgaagctgaagtttaccaagctttaag 9290878  T

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