View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_11 (Length: 563)
Name: NF1459_low_11
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Complemental strand, 2551984 - 2551440
Alignment:
| Q |
1 |
ttggttaaccatgaagatgtagatgcgcttctagttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcat |
100 |
Q |
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| T |
2551984 |
ttggttaaccatgaagatgtagatgcgcttctagttgttcgaaaagaaccttcgaaatccttacgtccactcgaacaaatttgacctattgagctatcat |
2551885 |
T |
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| Q |
101 |
gaagaatttcatggattataggatcacttatttcaatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttggat |
200 |
Q |
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| T |
2551884 |
gaagaatttcatggattataggatcacttatttcaatgctcccttcagattcttgatacaaacttgatgaatttgttaagaacctcttgcttccttggat |
2551785 |
T |
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| Q |
201 |
gatattagaatgatcgagtaaacccggctttgttctctgattgttcttacctttttggtgcttaattgtctttggatcatagacatgttttttgttgggt |
300 |
Q |
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| T |
2551784 |
gatatttgaatgatcgagtaaacccgactttgttctctgattattcttacctttttggtgcttaattgtctttggatcataaacatgttttttgttgggt |
2551685 |
T |
|
| Q |
301 |
ttgcattgaagcttgttctttagagaaacacaaaattcaagcattt---tttgtctttcttttctttatactcttgaaaaatattctannnnnnnnnnnn |
397 |
Q |
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| T |
2551684 |
ttgcattgaagcttgttctttagagaaacacaaaattcaagcattttaatttgtctttcttttctttatactcttgaaaaatattctaatatatata--- |
2551588 |
T |
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| Q |
398 |
nnnnnntagaatatttttcaatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaag |
497 |
Q |
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| T |
2551587 |
-------agaatatttttcaatgtattccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaag |
2551495 |
T |
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| Q |
498 |
ttttttgcaaataaattccatgtgtaacatgatatacattattcattgatttcat |
552 |
Q |
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| T |
2551494 |
ttttttgcaaataaattccatgtgtaacatgatatacattattcattgatttcat |
2551440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 2562663 - 2562572
Alignment:
| Q |
249 |
acctttttggtgcttaattgtctttggatcatagacatgttttttgttg-ggtttgcattgaagcttgttctttagagaaacacaaaattcaa |
340 |
Q |
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| T |
2562663 |
acctttttggtgcctaaatgtctttggatcatgaacttg-ttttggttgtggtttgcattgaagcttcctcttgaaagaaagacaaatttcaa |
2562572 |
T |
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