View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1459_low_112 (Length: 260)
Name: NF1459_low_112
Description: NF1459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1459_low_112 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 2998877 - 2999111
Alignment:
| Q |
18 |
ctacatagctggcatgtgatgattcactttggttgtctgtctgtcttgtcttgaacctgaagttcttatccaattttcaggactggttggctcacatgaa |
117 |
Q |
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| T |
2998877 |
ctacatagctggcatgtgatgattcactttggttgtctgtctgtcttgtcttgaacctgaagttcttatccaattttcaggactggttggctcacatgaa |
2998976 |
T |
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| Q |
118 |
atgaaatgtagttttgagttttacttctataagttgatcatatccactcaattatcgtgattttggatatgtaaatgattaaaactaatttggctcctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2998977 |
atgaaatgtagttttgagttttacttctataagttgatcatatccactcaattatcgtgattttggatatgtaaatgattaaaactaatttggctcctat |
2999076 |
T |
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| Q |
218 |
ttgtaagttgtaacatatatttgagttaataaaaa |
252 |
Q |
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|||||||||||||||||||||| |||||||||||| |
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| T |
2999077 |
ttgtaagttgtaacatatatttaagttaataaaaa |
2999111 |
T |
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